Variant report

Variant	rs9497351
Chromosome Location	chr6:145894068-145894069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17724951	0.98[ASN][1000 genomes]
rs17724957	0.81[ASN][1000 genomes]
rs17725045	0.81[ASN][1000 genomes]
rs17725081	0.81[ASN][1000 genomes]
rs17725112	0.81[ASN][1000 genomes]
rs17725154	0.81[ASN][1000 genomes]
rs17797768	0.95[ASN][1000 genomes]
rs17797774	0.95[ASN][1000 genomes]
rs17797949	0.81[ASN][1000 genomes]
rs17798033	0.81[ASN][1000 genomes]
rs2143065	1.00[ASN][1000 genomes]
rs58658594	0.95[ASN][1000 genomes]
rs61358848	0.91[ASN][1000 genomes]
rs61638226	0.91[ASN][1000 genomes]
rs6925385	0.81[ASN][1000 genomes]
rs73579444	0.81[ASN][1000 genomes]
rs7740548	0.86[AFR][1000 genomes]
rs7757714	0.86[AFR][1000 genomes]
rs9485006	0.86[AFR][1000 genomes]
rs9485011	0.86[AFR][1000 genomes]
rs9485013	0.86[AFR][1000 genomes]
rs9485014	0.86[AFR][1000 genomes]
rs9497317	0.86[AFR][1000 genomes]
rs9497321	0.86[AFR][1000 genomes]
rs9497340	0.86[AFR][1000 genomes]
rs9497341	0.86[AFR][1000 genomes]
rs9497353	0.86[AFR][1000 genomes]
rs9497356	0.86[AFR][1000 genomes]
rs9497367	0.86[AFR][1000 genomes]
rs9497369	0.86[AFR][1000 genomes]
rs9497370	0.86[AFR][1000 genomes]
rs9497371	0.86[AFR][1000 genomes]
rs9497372	0.86[AFR][1000 genomes]
rs9497373	0.86[AFR][1000 genomes]
rs9497375	0.86[AFR][1000 genomes]
rs9497383	0.86[AFR][1000 genomes]
rs9497397	0.86[AFR][1000 genomes]
rs9497400	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886746	chr6:145815949-145920894	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886747	chr6:145815949-145922777	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1028290	chr6:145819982-145911857	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886748	chr6:145835917-145911730	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145890600-145904600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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