Variant report

Variant	rs17797949
Chromosome Location	chr6:145941639-145941640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17054153	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075370	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075385	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075389	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075400	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17724951	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17724957	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17725045	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17725081	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17725112	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17725154	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17798033	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17798183	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17798189	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17798207	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2143065	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6570721	0.83[ASN][1000 genomes]
rs73579444	1.00[ASN][1000 genomes]
rs9497351	0.81[ASN][1000 genomes]
rs999859	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145924400-145948200	Weak transcription	Left Ventricle	heart
2	chr6:145934200-145948000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:145937600-145952000	Weak transcription	Psoas Muscle	Psoas
4	chr6:145938200-145943800	Weak transcription	Aorta	Aorta
5	chr6:145939800-145948400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:145941600-145954200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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