Variant report

Variant	rs17054153
Chromosome Location	chr6:146124631-146124632
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65265648..65267298-chr6:146124589..146126834,2	MCF-7	breast:
2	chr6:146117599..146120240-chr6:146121870..146124861,2	MCF-7	breast:
3	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
4	chr6:146122818..146124634-chr6:146134997..146137828,2	MCF-7	breast:
5	chr6:146105593..146108141-chr6:146123626..146125725,2	K562	blood:
6	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

Variant related genes	Relation type
ENSG00000270828	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000112425	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17075370	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075385	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075389	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075404	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075411	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075465	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs17075499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075515	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs17075527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17724951	1.00[AFR][1000 genomes]
rs17724957	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725045	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725081	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725112	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17725154	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17797949	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17798033	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17798183	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17798189	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17798207	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1970304	0.94[ASN][1000 genomes]
rs2143065	1.00[AFR][1000 genomes]
rs6570721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73579444	0.88[ASN][1000 genomes]
rs999859	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
3	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:146105800-146125600	Weak transcription	Fetal Kidney	kidney
5	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:146107000-146125600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
8	chr6:146112400-146125400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:146112400-146125400	Weak transcription	Fetal Stomach	stomach
10	chr6:146112400-146125600	Weak transcription	Aorta	Aorta
11	chr6:146112400-146125600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:146112600-146125800	Weak transcription	Fetal Brain Female	brain
14	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:146113800-146126000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:146114400-146125400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:146116400-146126600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:146116800-146125400	Weak transcription	Esophagus	oesophagus
19	chr6:146116800-146126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:146116800-146128600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:146117200-146126200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:146117400-146130400	Strong transcription	HSMM	muscle
23	chr6:146118000-146125600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:146118400-146126400	Weak transcription	Spleen	Spleen
25	chr6:146118400-146128600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:146118800-146124800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:146118800-146125600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:146119000-146125600	Weak transcription	Brain Anterior Caudate	brain
29	chr6:146119000-146126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:146119200-146125600	Weak transcription	Ovary	ovary
31	chr6:146119200-146134800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:146119400-146126400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:146119400-146127600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:146119400-146135000	Weak transcription	Small Intestine	intestine
35	chr6:146119600-146127400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:146119800-146125800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:146120000-146125800	Weak transcription	Right Ventricle	heart
38	chr6:146120200-146125400	Weak transcription	Lung	lung
39	chr6:146120200-146125600	Weak transcription	NHDF-Ad	bronchial
40	chr6:146120200-146127600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:146120200-146127600	Strong transcription	Dnd41	blood
42	chr6:146120200-146128600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:146120200-146129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr6:146120600-146128600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:146120800-146125600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:146121200-146127600	Strong transcription	Osteobl	bone
47	chr6:146121200-146134600	Weak transcription	Colonic Mucosa	Colon
48	chr6:146121200-146134600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:146121400-146125600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr6:146121400-146130400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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