Variant report

Variant	rs17075548
Chromosome Location	chr6:146289510-146289511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:146289477-146289527	ovcar-3	ovarian:	n/a
2	chr6:146289477-146289527	BE2_C	brain:	n/a
3	chr6:146289477-146289527	Hela-S3	cervix:	n/a
4	chr6:146289477-146289527	Caco-2	colon:	n/a
5	chr6:146289477-146289527	A549	lung:	n/a
6	chr6:146289477-146289527	ProgFib	skin:	n/a
7	chr6:146289477-146289527	U87	brain:	n/a
8	chr6:146289477-146289527	BJ	skin:	n/a
9	chr6:146289477-146289527	HEK293	kidney:	embryo
10	chr6:146289477-146289527	HRPEpiC	eye:	n/a
11	chr6:146289477-146289527	T-47D	breast:	n/a
12	chr6:146289477-146289527	NB4	blood:	n/a
13	chr6:146289477-146289527	RPTEC	kidney:	n/a
14	chr6:146289477-146289527	HEEpiC	esophagus:	n/a
15	chr6:146289477-146289527	NHBE	bronchial:	n/a
16	chr6:146289477-146289527	HUVEC	blood vessel:	n/a
17	chr6:146289477-146289527	GM19239	blood:	n/a
18	chr6:146289477-146289527	AG04449	skin:	fetal
19	chr6:146289477-146289527	HIPEpiC	eye:	n/a
20	chr6:146289477-146289527	H1-hESC	embryonic stem cell:	embryo
21	chr6:146289477-146289527	HCF	heart:	n/a
22	chr6:146289477-146289527	NH-A	brain:	n/a
23	chr6:146289477-146289527	SK-N-SH_RA	brain:	n/a
24	chr6:146289477-146289527	SK-N-SH	brain:	n/a
25	chr6:146289477-146289527	SAEC	small airway:	n/a
26	chr6:146289477-146289527	MCF-7	breast:	n/a
27	chr6:146289477-146289527	HRE	kidney:	n/a
28	chr6:146289477-146289527	K562	blood:	n/a
29	chr6:146289477-146289527	GM06990	blood:	n/a
30	chr6:146289477-146289527	GM12891	blood:	n/a
31	chr6:146289477-146289527	GM12892	blood:	n/a
32	chr6:146289477-146289527	PFSK-1	brain:	n/a
33	chr6:146289477-146289527	Jurkat	blood:	n/a
34	chr6:146289477-146289527	LNCaP	prostate:	n/a
35	chr6:146289477-146289527	MCF10A-Er-Src	breast:	n/a
36	chr6:146289477-146289527	AG10803	skin:	n/a
37	chr6:146289477-146289527	AG09319	gingival:	n/a
38	chr6:146289477-146289527	ECC-1	luminal epithelium:	n/a
39	chr6:146289477-146289527	HAEpiC	amniotic membrane:	n/a
40	chr6:146289477-146289527	Hepatocyte	liver:	n/a
41	chr6:146289477-146289527	GM12878	blood:	n/a
42	chr6:146289477-146289527	AoSMC	blood vessel:	n/a
43	chr6:146289477-146289527	SKMC	muscle:	n/a
44	chr6:146289477-146289527	HMEC	breast:	n/a
45	chr6:146289477-146289527	AG04450	lung:	fetal
46	chr6:146289477-146289527	IMR90	lung:	fetal
47	chr6:146289477-146289527	PrEC	prostate:	n/a
48	chr6:146289477-146289527	PANC-1	pancreas:	n/a
49	chr6:146289477-146289527	SK-N-MC	brain:	n/a
50	chr6:146289477-146289527	HepG2	liver:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:146288938..146291653-chr6:146295363..146296919,2	MCF-7	breast:
2	chr6:146125578..146127753-chr6:146287911..146290228,2	K562	blood:
3	chr6:146289276..146291444-chr6:146294300..146296249,2	K562	blood:

No data

Variant related genes	Relation type
SHPRH	CpG island

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17054153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075389	0.82[ASN][1000 genomes]
rs17075400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075411	0.82[ASN][1000 genomes]
rs17075414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075465	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075511	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075515	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075527	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075544	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075546	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17075584	0.94[ASN][1000 genomes]
rs17075588	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17075636	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075661	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075663	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075666	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1970304	1.00[AFR][1000 genomes]
rs6570721	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7739858	0.94[ASN][1000 genomes]
rs9497449	0.94[ASN][1000 genomes]
rs999859	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146287400-146290600	Weak transcription	K562	blood

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