Variant report

Variant	rs17075604
Chromosome Location	chr6:146348299-146348300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17075400	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17075404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17075414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17075446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17075465	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[AFR][1000 genomes]
rs17075499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17075501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17075511	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17075515	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17075527	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17075530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17075544	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17075546	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17075548	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17075552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17075584	0.97[ASN][1000 genomes]
rs17075588	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17075636	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17075661	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17075663	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17075666	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1970304	1.00[AFR][1000 genomes]
rs7739858	0.97[ASN][1000 genomes]
rs9497449	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146347800-146348600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr6:146348000-146348400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
3	chr6:146348000-146348800	Weak transcription	Lung	lung
4	chr6:146348200-146348400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr6:146348200-146348600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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