Variant report

Variant	rs17075511
Chromosome Location	chr6:146246731-146246732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146133340..146135050-chr6:146244297..146247013,2	K562	blood:
2	chr6:146241281..146242831-chr6:146245314..146247478,2	K562	blood:
3	chr6:146234113..146237029-chr6:146245031..146246737,2	K562	blood:
4	chr6:146244279..146247175-chr6:146249280..146252012,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17054153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075389	0.88[ASN][1000 genomes]
rs17075400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075411	0.88[ASN][1000 genomes]
rs17075414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075465	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075515	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075527	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075544	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075546	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075548	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17075552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075584	0.88[ASN][1000 genomes]
rs17075588	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17075636	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17075661	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17075663	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17075666	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17798183	0.83[ASN][1000 genomes]
rs17798189	0.83[ASN][1000 genomes]
rs17798207	0.83[ASN][1000 genomes]
rs1970304	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6570721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7739858	0.88[ASN][1000 genomes]
rs9497449	0.88[ASN][1000 genomes]
rs999859	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
2	chr6:146219200-146249200	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:146219600-146250600	Strong transcription	Dnd41	blood
5	chr6:146219800-146271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:146220000-146249400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:146220000-146255200	Weak transcription	Gastric	stomach
8	chr6:146220000-146259400	Weak transcription	Esophagus	oesophagus
9	chr6:146220000-146276800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:146220000-146283200	Weak transcription	Small Intestine	intestine
11	chr6:146220200-146268400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:146220400-146255200	Weak transcription	Fetal Intestine Small	intestine
13	chr6:146223800-146248600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:146224600-146257000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:146225200-146268600	Weak transcription	Stomach Mucosa	stomach
16	chr6:146225400-146248400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:146225400-146249600	Strong transcription	Adipose Nuclei	Adipose
18	chr6:146226000-146249000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:146226000-146249600	Strong transcription	Liver	Liver
20	chr6:146226200-146284200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:146226400-146268600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:146226600-146249200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:146226800-146249400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr6:146226800-146270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:146227200-146248400	Strong transcription	Duodenum Mucosa	Duodenum
26	chr6:146227200-146268800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:146227400-146248400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:146227600-146248400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:146227800-146248200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:146228000-146249200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:146228000-146249400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:146228600-146248400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr6:146228600-146248600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:146229800-146248600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:146230600-146270400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:146231800-146256000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:146232000-146262400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:146232000-146282800	Weak transcription	NHLF	lung
39	chr6:146232800-146255800	Weak transcription	Lung	lung
40	chr6:146233200-146247400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:146233400-146255200	Weak transcription	Fetal Stomach	stomach
42	chr6:146233400-146255200	Weak transcription	Thymus	Thymus
43	chr6:146233400-146256000	Weak transcription	Pancreas	Pancrea
44	chr6:146233400-146261800	Weak transcription	Aorta	Aorta
45	chr6:146233400-146268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:146235600-146283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:146235800-146259600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:146237000-146247400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:146237200-146248400	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr6:146237400-146248000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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