Variant report

Variant	rs7739858
Chromosome Location	chr6:146374584-146374585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146373379..146375346-chr6:146377226..146379256,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs12332892	1.00[EUR][1000 genomes]
rs17075404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17075414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17075446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075465	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17075499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17075511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17075515	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs17075527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17075584	1.00[ASN][1000 genomes]
rs17075588	1.00[ASN][1000 genomes]
rs17075604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17075636	1.00[ASN][1000 genomes]
rs17075661	0.94[ASN][1000 genomes]
rs17075663	0.94[ASN][1000 genomes]
rs17075666	0.94[ASN][1000 genomes]
rs1854902	0.81[ASN][1000 genomes]
rs28738876	1.00[EUR][1000 genomes]
rs55671343	1.00[EUR][1000 genomes]
rs55879513	1.00[EUR][1000 genomes]
rs57776904	1.00[EUR][1000 genomes]
rs57889864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58702332	1.00[EUR][1000 genomes]
rs59951042	1.00[EUR][1000 genomes]
rs60430705	1.00[EUR][1000 genomes]
rs60698481	1.00[EUR][1000 genomes]
rs60885622	1.00[EUR][1000 genomes]
rs60899243	1.00[EUR][1000 genomes]
rs6570725	1.00[EUR][1000 genomes]
rs6570727	1.00[EUR][1000 genomes]
rs6570730	1.00[EUR][1000 genomes]
rs6900607	1.00[EUR][1000 genomes]
rs6904612	1.00[EUR][1000 genomes]
rs6905255	1.00[EUR][1000 genomes]
rs6918314	1.00[EUR][1000 genomes]
rs6924714	1.00[EUR][1000 genomes]
rs6927890	1.00[EUR][1000 genomes]
rs6928607	1.00[EUR][1000 genomes]
rs6935019	1.00[EUR][1000 genomes]
rs6936647	1.00[EUR][1000 genomes]
rs6936879	1.00[EUR][1000 genomes]
rs73572189	1.00[EUR][1000 genomes]
rs73573176	1.00[EUR][1000 genomes]
rs73573178	1.00[EUR][1000 genomes]
rs73573193	1.00[EUR][1000 genomes]
rs73574105	1.00[EUR][1000 genomes]
rs73575041	1.00[EUR][1000 genomes]
rs73576133	1.00[EUR][1000 genomes]
rs73576161	1.00[EUR][1000 genomes]
rs73576173	1.00[EUR][1000 genomes]
rs73576180	1.00[EUR][1000 genomes]
rs73576928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576998	1.00[AMR][1000 genomes]
rs73577141	1.00[EUR][1000 genomes]
rs73577145	1.00[EUR][1000 genomes]
rs73577150	1.00[EUR][1000 genomes]
rs73578805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578807	1.00[EUR][1000 genomes]
rs73578811	1.00[EUR][1000 genomes]
rs73578812	1.00[EUR][1000 genomes]
rs73578814	1.00[EUR][1000 genomes]
rs73578823	1.00[EUR][1000 genomes]
rs73578827	1.00[EUR][1000 genomes]
rs73578832	1.00[EUR][1000 genomes]
rs73578833	1.00[EUR][1000 genomes]
rs73580158	1.00[EUR][1000 genomes]
rs73580169	1.00[EUR][1000 genomes]
rs73580174	1.00[EUR][1000 genomes]
rs73580180	1.00[EUR][1000 genomes]
rs73580202	1.00[EUR][1000 genomes]
rs73582109	1.00[EUR][1000 genomes]
rs73582112	1.00[EUR][1000 genomes]
rs73582116	1.00[EUR][1000 genomes]
rs73582125	1.00[EUR][1000 genomes]
rs73582139	1.00[EUR][1000 genomes]
rs73582149	1.00[EUR][1000 genomes]
rs73582176	1.00[EUR][1000 genomes]
rs73582189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7740567	1.00[EUR][1000 genomes]
rs7757974	1.00[EUR][1000 genomes]
rs7762880	1.00[EUR][1000 genomes]
rs9322040	1.00[EUR][1000 genomes]
rs9497422	1.00[EUR][1000 genomes]
rs9497423	1.00[EUR][1000 genomes]
rs9497430	1.00[EUR][1000 genomes]
rs9497449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029440	chr6:146349442-146407453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146370200-146377600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:146373400-146375000	Enhancers	HUVEC	blood vessel

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