Variant report

Variant	rs73576161
Chromosome Location	chr6:146196941-146196942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146195474..146197660-chr6:146199765..146202378,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM1-3	chr6:146195888-146199214	NONHSAT115414

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12332892	1.00[EUR][1000 genomes]
rs28738876	1.00[EUR][1000 genomes]
rs55671343	1.00[EUR][1000 genomes]
rs55879513	1.00[EUR][1000 genomes]
rs56954340	1.00[EUR][1000 genomes]
rs57057101	1.00[EUR][1000 genomes]
rs57776904	1.00[EUR][1000 genomes]
rs57889864	1.00[EUR][1000 genomes]
rs58290238	1.00[EUR][1000 genomes]
rs58702332	1.00[EUR][1000 genomes]
rs59951042	1.00[EUR][1000 genomes]
rs60430705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60698481	1.00[EUR][1000 genomes]
rs60885622	1.00[EUR][1000 genomes]
rs60899243	1.00[EUR][1000 genomes]
rs6570725	1.00[EUR][1000 genomes]
rs6570727	1.00[EUR][1000 genomes]
rs6570730	1.00[EUR][1000 genomes]
rs6900565	1.00[EUR][1000 genomes]
rs6900607	1.00[EUR][1000 genomes]
rs6904612	1.00[EUR][1000 genomes]
rs6918314	1.00[EUR][1000 genomes]
rs6920565	1.00[EUR][1000 genomes]
rs6924714	1.00[EUR][1000 genomes]
rs6928607	1.00[EUR][1000 genomes]
rs6935019	1.00[EUR][1000 genomes]
rs6936647	1.00[EUR][1000 genomes]
rs6936879	1.00[EUR][1000 genomes]
rs6938895	1.00[EUR][1000 genomes]
rs6940256	1.00[EUR][1000 genomes]
rs73566143	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73570006	1.00[EUR][1000 genomes]
rs73570010	1.00[EUR][1000 genomes]
rs73570033	1.00[EUR][1000 genomes]
rs73570037	1.00[EUR][1000 genomes]
rs73570042	1.00[EUR][1000 genomes]
rs73572161	1.00[EUR][1000 genomes]
rs73572189	1.00[EUR][1000 genomes]
rs73574105	1.00[EUR][1000 genomes]
rs73576133	1.00[EUR][1000 genomes]
rs73576173	1.00[EUR][1000 genomes]
rs73576180	1.00[EUR][1000 genomes]
rs73576928	1.00[EUR][1000 genomes]
rs73578805	1.00[EUR][1000 genomes]
rs73578807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580158	1.00[EUR][1000 genomes]
rs73580169	1.00[EUR][1000 genomes]
rs73580174	1.00[EUR][1000 genomes]
rs73580180	1.00[EUR][1000 genomes]
rs73580202	1.00[EUR][1000 genomes]
rs73582109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582112	1.00[EUR][1000 genomes]
rs73582116	1.00[EUR][1000 genomes]
rs73582125	1.00[EUR][1000 genomes]
rs73582139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582149	1.00[EUR][1000 genomes]
rs73582176	1.00[EUR][1000 genomes]
rs73582189	1.00[EUR][1000 genomes]
rs73584226	1.00[EUR][1000 genomes]
rs7739858	1.00[EUR][1000 genomes]
rs7740567	1.00[EUR][1000 genomes]
rs7757974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762880	1.00[EUR][1000 genomes]
rs9322040	1.00[EUR][1000 genomes]
rs9497422	1.00[EUR][1000 genomes]
rs9497423	1.00[EUR][1000 genomes]
rs9497430	1.00[EUR][1000 genomes]
rs9497449	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146172200-146202400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:146177600-146204200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146185200-146212200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:146186400-146213200	Weak transcription	Brain Anterior Caudate	brain
5	chr6:146186800-146199400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:146188000-146201400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:146188000-146218800	Weak transcription	Right Ventricle	heart
8	chr6:146188400-146201200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:146188800-146209000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:146189200-146202400	Weak transcription	Thymus	Thymus
11	chr6:146189400-146201400	Weak transcription	Dnd41	blood
12	chr6:146189400-146202800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:146189400-146214400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:146189600-146211800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:146193400-146207600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:146193800-146201600	Weak transcription	HSMM	muscle
17	chr6:146194000-146211800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:146194200-146202400	Weak transcription	Primary T cells from cord blood	blood
19	chr6:146194400-146197200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:146194800-146212400	Weak transcription	HUVEC	blood vessel
21	chr6:146195000-146209400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:146196000-146198200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:146196000-146199400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:146196200-146197400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:146196200-146198000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:146196200-146198200	Enhancers	HSMMtube	muscle
27	chr6:146196200-146210000	Weak transcription	Fetal Brain Male	brain
28	chr6:146196400-146197000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:146196400-146197600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:146196400-146197600	Enhancers	Ovary	ovary
31	chr6:146196400-146197800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:146196600-146198000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:146196600-146198200	Enhancers	Fetal Heart	heart
34	chr6:146196600-146202200	Weak transcription	Left Ventricle	heart
35	chr6:146196600-146202400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:146196600-146202400	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:146196600-146212200	Weak transcription	Aorta	Aorta
38	chr6:146196600-146219600	Weak transcription	HMEC	breast
39	chr6:146196800-146197000	Enhancers	Colon Smooth Muscle	Colon
40	chr6:146196800-146197000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:146196800-146197200	Weak transcription	NHDF-Ad	bronchial
42	chr6:146196800-146197400	Enhancers	Right Atrium	heart
43	chr6:146196800-146198000	Enhancers	Psoas Muscle	Psoas
44	chr6:146196800-146209000	Weak transcription	Duodenum Mucosa	Duodenum

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