Variant report

Variant	rs73570042
Chromosome Location	chr6:146127756-146127757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:146127456..146130857-chr6:146284369..146287201,3	K562	blood:
2	chr6:146088676..146091245-chr6:146126416..146129256,2	K562	blood:
3	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
4	chr6:145965389..145967429-chr6:146126660..146128334,2	K562	blood:
5	chr6:146054833..146059237-chr6:146126389..146132897,8	MCF-7	breast:
6	chr6:146120708..146122690-chr6:146126076..146128209,2	MCF-7	breast:
7	chr6:146054602..146056555-chr6:146125014..146127931,2	MCF-7	breast:
8	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270828	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000146414	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12332892	1.00[EUR][1000 genomes]
rs28738876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671343	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55879513	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56954340	1.00[EUR][1000 genomes]
rs57057101	1.00[EUR][1000 genomes]
rs57776904	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58290238	1.00[EUR][1000 genomes]
rs58702332	1.00[EUR][1000 genomes]
rs59951042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60698481	1.00[EUR][1000 genomes]
rs60885622	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60899243	1.00[EUR][1000 genomes]
rs6570725	1.00[EUR][1000 genomes]
rs6570727	1.00[EUR][1000 genomes]
rs6570730	1.00[EUR][1000 genomes]
rs6900565	1.00[EUR][1000 genomes]
rs6900607	1.00[EUR][1000 genomes]
rs6904612	1.00[EUR][1000 genomes]
rs6918314	1.00[EUR][1000 genomes]
rs6920565	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924714	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6928607	1.00[EUR][1000 genomes]
rs6935019	1.00[EUR][1000 genomes]
rs6936647	1.00[EUR][1000 genomes]
rs6936879	1.00[EUR][1000 genomes]
rs6938895	1.00[EUR][1000 genomes]
rs6940256	1.00[EUR][1000 genomes]
rs73566143	1.00[EUR][1000 genomes]
rs73568386	1.00[EUR][1000 genomes]
rs73568401	1.00[EUR][1000 genomes]
rs73570006	1.00[EUR][1000 genomes]
rs73570010	1.00[EUR][1000 genomes]
rs73570033	1.00[EUR][1000 genomes]
rs73570037	1.00[EUR][1000 genomes]
rs73572161	1.00[EUR][1000 genomes]
rs73572189	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73574105	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576133	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576161	1.00[EUR][1000 genomes]
rs73576173	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576180	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580158	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580169	1.00[EUR][1000 genomes]
rs73580174	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580180	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580202	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582109	1.00[EUR][1000 genomes]
rs73582112	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582116	1.00[EUR][1000 genomes]
rs73582125	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582139	1.00[EUR][1000 genomes]
rs73582149	1.00[EUR][1000 genomes]
rs73582176	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582189	1.00[EUR][1000 genomes]
rs73584226	1.00[EUR][1000 genomes]
rs7740567	1.00[EUR][1000 genomes]
rs7748102	1.00[AMR][1000 genomes]
rs7762880	1.00[EUR][1000 genomes]
rs9322040	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497422	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497423	1.00[EUR][1000 genomes]
rs9497430	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv981375	chr6:146125997-146130212	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
2	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
4	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:146116800-146128600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:146117400-146130400	Strong transcription	HSMM	muscle
8	chr6:146118400-146128600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:146119200-146134800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:146119400-146135000	Weak transcription	Small Intestine	intestine
11	chr6:146120200-146128600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:146120200-146129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:146120600-146128600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:146121200-146134600	Weak transcription	Colonic Mucosa	Colon
15	chr6:146121200-146134600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:146121400-146130400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:146121400-146135000	Weak transcription	Gastric	stomach
18	chr6:146121600-146127800	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:146122200-146127800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:146122200-146128000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:146122200-146128600	Strong transcription	A549	lung
22	chr6:146122200-146129200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:146122200-146134000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:146122400-146128600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:146122400-146130400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:146122800-146127800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:146123000-146128600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:146123200-146127800	Strong transcription	K562	blood
29	chr6:146124400-146127800	Strong transcription	NH-A	brain
30	chr6:146124800-146128800	ZNF genes & repeats	GM12878-XiMat	blood
31	chr6:146125200-146127800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:146125400-146134200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:146125600-146128600	Genic enhancers	Rectal Smooth Muscle	rectum
34	chr6:146125600-146128800	Strong transcription	NHEK	skin
35	chr6:146125800-146133400	Weak transcription	Fetal Intestine Small	intestine
36	chr6:146126200-146130800	Weak transcription	Psoas Muscle	Psoas
37	chr6:146126600-146133000	Weak transcription	Right Atrium	heart
38	chr6:146126600-146134400	Weak transcription	Right Ventricle	heart
39	chr6:146126800-146130600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:146127000-146133000	Weak transcription	Fetal Brain Male	brain
41	chr6:146127000-146133600	Weak transcription	Brain Germinal Matrix	brain
42	chr6:146127200-146134600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:146127200-146134800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:146127400-146128200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:146127400-146128200	Weak transcription	Fetal Brain Female	brain
46	chr6:146127400-146129600	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:146127400-146129800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:146127400-146129800	Weak transcription	Fetal Heart	heart
49	chr6:146127400-146130000	Weak transcription	Brain Anterior Caudate	brain
50	chr6:146127400-146130400	Weak transcription	Primary B cells from peripheral blood	blood

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