Variant report

Variant	rs73568401
Chromosome Location	chr6:145950346-145950347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145942233..145945341-chr6:145949543..145951828,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4566900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56954340	1.00[EUR][1000 genomes]
rs57057101	1.00[EUR][1000 genomes]
rs58290238	1.00[EUR][1000 genomes]
rs60698481	1.00[EUR][1000 genomes]
rs60899243	1.00[EUR][1000 genomes]
rs6570725	1.00[EUR][1000 genomes]
rs6570727	1.00[EUR][1000 genomes]
rs6899864	1.00[EUR][1000 genomes]
rs6900565	1.00[EUR][1000 genomes]
rs6918314	1.00[EUR][1000 genomes]
rs6920565	1.00[EUR][1000 genomes]
rs6938895	1.00[EUR][1000 genomes]
rs6940256	1.00[EUR][1000 genomes]
rs73559143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73559156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73560914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73566143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73568386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73570006	1.00[EUR][1000 genomes]
rs73570010	1.00[EUR][1000 genomes]
rs73570033	1.00[EUR][1000 genomes]
rs73570037	1.00[EUR][1000 genomes]
rs73570042	1.00[EUR][1000 genomes]
rs73572161	1.00[EUR][1000 genomes]
rs73572189	1.00[EUR][1000 genomes]
rs73574105	1.00[EUR][1000 genomes]
rs73576133	1.00[EUR][1000 genomes]
rs7748474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933782	chr6:145946431-145956458	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145937600-145952000	Weak transcription	Psoas Muscle	Psoas
2	chr6:145941600-145954200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:145942400-145955400	Weak transcription	Esophagus	oesophagus
4	chr6:145945200-145955400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:145945800-145955000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:145946000-145951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:145946200-145955000	Weak transcription	Stomach Mucosa	stomach
8	chr6:145946400-145950400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:145946400-145950400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:145946400-145955600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:145946800-145950600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:145946800-145950600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:145946800-145950800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:145946800-145952400	Weak transcription	Fetal Brain Female	brain
15	chr6:145946800-145955400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:145947000-145955400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:145947000-145955800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:145947200-145955400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:145947400-145952200	Strong transcription	Primary T cells from cord blood	blood
20	chr6:145947400-145955400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:145948000-145951200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:145948200-145950800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:145948200-145950800	Weak transcription	HSMMtube	muscle
24	chr6:145948200-145951000	Strong transcription	Fetal Intestine Small	intestine
25	chr6:145948200-145951000	Strong transcription	Fetal Stomach	stomach
26	chr6:145948400-145951000	Weak transcription	Colonic Mucosa	Colon
27	chr6:145948600-145951000	Strong transcription	Stomach Smooth Muscle	stomach
28	chr6:145948600-145954600	Weak transcription	Brain Anterior Caudate	brain
29	chr6:145948800-145950400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:145948800-145950600	Weak transcription	Lung	lung
31	chr6:145948800-145952000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:145948800-145955400	Weak transcription	Brain Substantia Nigra	brain
33	chr6:145948800-145955400	Weak transcription	Right Ventricle	heart
34	chr6:145948800-145962400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:145949000-145950400	Weak transcription	Ovary	ovary
36	chr6:145949000-145950400	Weak transcription	Thymus	Thymus
37	chr6:145949000-145950800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:145949000-145952400	Weak transcription	Gastric	stomach
39	chr6:145949000-145952800	Weak transcription	Right Atrium	heart
40	chr6:145949000-145953400	Weak transcription	Left Ventricle	heart
41	chr6:145949000-145955400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:145949000-145955400	Weak transcription	Brain Angular Gyrus	brain
43	chr6:145949000-145955400	Weak transcription	Pancreas	Pancrea
44	chr6:145949000-145956200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:145949000-145968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:145949200-145951800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:145949200-145955400	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:145949200-145955600	Weak transcription	Fetal Thymus	thymus
49	chr6:145949600-145950800	Strong transcription	Liver	Liver
50	chr6:145949800-145950400	Strong transcription	Spleen	Spleen

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