Variant report

Variant	rs6938895
Chromosome Location	chr6:146109733-146109734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146109509..146111259-chr6:146124706..146127003,2	K562	blood:
2	chr6:146107452..146110586-chr6:146133888..146136897,3	K562	blood:
3	chr6:146091446..146094349-chr6:146109595..146112049,2	K562	blood:
4	chr6:146054610..146058060-chr6:146107299..146111680,4	K562	blood:

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000235652	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs12111476	0.81[LWK][hapmap]
rs12332892	1.00[EUR][1000 genomes]
rs1591698	0.85[AMR][1000 genomes]
rs28587324	0.85[AMR][1000 genomes]
rs28738876	1.00[EUR][1000 genomes]
rs4896849	0.96[AFR][1000 genomes]
rs55658016	0.85[AMR][1000 genomes]
rs55671343	1.00[EUR][1000 genomes]
rs55746945	0.85[AMR][1000 genomes]
rs55879513	1.00[EUR][1000 genomes]
rs56954340	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57057101	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57105639	0.85[AMR][1000 genomes]
rs57776904	1.00[EUR][1000 genomes]
rs58290238	1.00[EUR][1000 genomes]
rs58702332	1.00[EUR][1000 genomes]
rs59951042	1.00[EUR][1000 genomes]
rs60043524	0.99[AFR][1000 genomes]
rs60162832	0.85[AMR][1000 genomes]
rs60609437	0.85[AMR][1000 genomes]
rs60698481	1.00[EUR][1000 genomes]
rs60885622	1.00[EUR][1000 genomes]
rs60899243	1.00[EUR][1000 genomes]
rs6570702	0.81[LWK][hapmap]
rs6570710	0.85[AMR][1000 genomes]
rs6570714	0.85[AMR][1000 genomes]
rs6570720	0.85[AMR][1000 genomes]
rs6570721	0.92[MKK][hapmap]
rs6570722	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs6570725	1.00[EUR][1000 genomes]
rs6570727	1.00[EUR][1000 genomes]
rs6570730	1.00[EUR][1000 genomes]
rs6900158	0.85[AMR][1000 genomes]
rs6900565	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900607	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6901219	0.85[AMR][1000 genomes]
rs6901587	0.85[AMR][1000 genomes]
rs6902358	0.85[AMR][1000 genomes]
rs6902952	0.85[AMR][1000 genomes]
rs6913497	0.85[AMR][1000 genomes]
rs6914491	0.85[AMR][1000 genomes]
rs6914746	0.90[ASW][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6918314	1.00[EUR][1000 genomes]
rs6919173	0.81[LWK][hapmap]
rs6920565	1.00[EUR][1000 genomes]
rs6921110	0.85[AMR][1000 genomes]
rs6921551	0.90[ASW][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6924714	1.00[EUR][1000 genomes]
rs6927960	0.85[AMR][1000 genomes]
rs6928607	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6928780	0.85[AMR][1000 genomes]
rs6930335	0.81[LWK][hapmap];0.85[AMR][1000 genomes]
rs6931280	0.85[AMR][1000 genomes]
rs6935019	1.00[EUR][1000 genomes]
rs6936647	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6936879	1.00[EUR][1000 genomes]
rs6938028	0.90[ASW][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs6940256	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940415	0.85[AMR][1000 genomes]
rs73566113	0.85[AMR][1000 genomes]
rs73566115	0.85[AMR][1000 genomes]
rs73566121	0.85[AMR][1000 genomes]
rs73566126	0.85[AMR][1000 genomes]
rs73566139	0.85[AMR][1000 genomes]
rs73566140	0.85[AMR][1000 genomes]
rs73566143	1.00[EUR][1000 genomes]
rs73566157	0.85[AMR][1000 genomes]
rs73566168	0.85[AMR][1000 genomes]
rs73568130	0.85[AMR][1000 genomes]
rs73568133	0.85[AMR][1000 genomes]
rs73568134	0.85[AMR][1000 genomes]
rs73568145	0.85[AMR][1000 genomes]
rs73568148	0.85[AMR][1000 genomes]
rs73568151	0.85[AMR][1000 genomes]
rs73568185	0.85[AMR][1000 genomes]
rs73568188	0.85[AMR][1000 genomes]
rs73568386	1.00[EUR][1000 genomes]
rs73568401	1.00[EUR][1000 genomes]
rs73570006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73570010	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73570014	0.98[AFR][1000 genomes]
rs73570033	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73570037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73570042	1.00[EUR][1000 genomes]
rs73572161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73572189	1.00[EUR][1000 genomes]
rs73574105	1.00[EUR][1000 genomes]
rs73576133	1.00[EUR][1000 genomes]
rs73576161	1.00[EUR][1000 genomes]
rs73576173	1.00[EUR][1000 genomes]
rs73576180	1.00[EUR][1000 genomes]
rs73579498	0.85[AMR][1000 genomes]
rs73580158	1.00[EUR][1000 genomes]
rs73580169	1.00[EUR][1000 genomes]
rs73580174	1.00[EUR][1000 genomes]
rs73580180	1.00[EUR][1000 genomes]
rs73580202	1.00[EUR][1000 genomes]
rs73582109	1.00[EUR][1000 genomes]
rs73582112	1.00[EUR][1000 genomes]
rs73582116	1.00[EUR][1000 genomes]
rs73582125	1.00[EUR][1000 genomes]
rs73582139	1.00[EUR][1000 genomes]
rs73582149	1.00[EUR][1000 genomes]
rs73582176	1.00[EUR][1000 genomes]
rs73582189	1.00[EUR][1000 genomes]
rs73584226	1.00[EUR][1000 genomes]
rs73782053	0.85[AMR][1000 genomes]
rs73782068	0.85[AMR][1000 genomes]
rs7740567	1.00[EUR][1000 genomes]
rs7741139	0.85[AMR][1000 genomes]
rs7744082	0.85[AMR][1000 genomes]
rs7745379	0.85[AMR][1000 genomes]
rs7745722	0.85[AMR][1000 genomes]
rs7748474	1.00[EUR][1000 genomes]
rs7753694	0.81[LWK][hapmap]
rs7753832	0.85[AMR][1000 genomes]
rs7758839	0.85[AMR][1000 genomes]
rs7761251	0.85[AMR][1000 genomes]
rs7761577	0.83[LWK][hapmap];0.85[AMR][1000 genomes]
rs7762880	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7763273	0.85[AMR][1000 genomes]
rs7773780	0.81[LWK][hapmap]
rs9322040	1.00[EUR][1000 genomes]
rs9497422	1.00[EUR][1000 genomes]
rs9497423	1.00[EUR][1000 genomes]
rs9497430	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146100600-146123200	Weak transcription	HUVEC	blood vessel
2	chr6:146101000-146112200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:146101400-146110000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:146101400-146110800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:146101600-146110000	Weak transcription	Fetal Lung	lung
6	chr6:146101800-146114000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:146102400-146110600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:146103000-146119400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:146104400-146111200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:146104600-146118800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:146104800-146110200	Weak transcription	Spleen	Spleen
13	chr6:146104800-146111400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:146104800-146112400	Weak transcription	Right Atrium	heart
15	chr6:146105000-146123200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
17	chr6:146105400-146112000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:146105600-146119000	Weak transcription	NH-A	brain
20	chr6:146105800-146125600	Weak transcription	Fetal Kidney	kidney
21	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:146106200-146110600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:146106200-146111400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:146106200-146113800	Weak transcription	Dnd41	blood
25	chr6:146106400-146110600	Weak transcription	Fetal Heart	heart
26	chr6:146106600-146111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:146106600-146118400	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:146106600-146122200	Weak transcription	NHLF	lung
29	chr6:146106800-146109800	Weak transcription	Brain Substantia Nigra	brain
30	chr6:146106800-146110400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:146106800-146121200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:146106800-146122800	Weak transcription	HSMMtube	muscle
33	chr6:146107000-146109800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:146107000-146109800	Weak transcription	Fetal Stomach	stomach
35	chr6:146107000-146109800	Weak transcription	Pancreas	Pancrea
36	chr6:146107000-146110200	Weak transcription	Ovary	ovary
37	chr6:146107000-146110400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:146107000-146110800	Weak transcription	Aorta	Aorta
39	chr6:146107000-146111400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:146107000-146111800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:146107000-146111800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:146107000-146113200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:146107000-146122200	Weak transcription	Left Ventricle	heart
44	chr6:146107000-146125600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:146107400-146111200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:146109000-146110800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:146109000-146112200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:146109000-146112600	ZNF genes & repeats	Fetal Brain Female	brain
49	chr6:146109400-146110000	Strong transcription	HSMM	muscle
50	chr6:146109400-146110800	Enhancers	Psoas Muscle	Psoas

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