Variant report

Variant	rs6901219
Chromosome Location	chr6:146043652-146043653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146042289..146044000-chr6:146051001..146052592,2	MCF-7	breast:
2	chr6:146040935..146043789-chr6:146048451..146050573,2	K562	blood:
3	chr6:146042690..146044450-chr6:146054852..146056800,2	MCF-7	breast:
4	chr6:146043150..146050221-chr6:146053202..146058792,11	MCF-7	breast:
5	chr6:146040708..146045667-chr6:146052083..146058701,12	K562	blood:

Variant related genes	Relation type
ENSG00000270828	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000112425	Chromatin interaction

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs12111090	0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12111476	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1591698	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479261	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28587324	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28829296	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4896845	0.92[AFR][1000 genomes]
rs4896847	0.92[AFR][1000 genomes]
rs55658016	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55746945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55813779	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55814547	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55820518	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56116838	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56198487	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56241331	0.82[AFR][1000 genomes]
rs56282473	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56864636	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56950953	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56954340	0.85[AMR][1000 genomes]
rs57057101	0.85[AMR][1000 genomes]
rs57105639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57646957	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58588227	0.98[AFR][1000 genomes]
rs59135568	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59557516	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60162832	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60609437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60875801	0.87[AFR][1000 genomes]
rs61014905	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61041405	0.86[AFR][1000 genomes]
rs61121433	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570702	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6570704	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6570707	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570709	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570714	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570720	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900565	0.85[AMR][1000 genomes]
rs6901587	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902273	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902358	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902952	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904060	0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs6908707	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6913497	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914491	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918350	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6918739	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6919173	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6920248	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs6921110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925420	0.83[AMR][1000 genomes]
rs6927960	0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928780	0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930335	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931280	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938895	0.85[AMR][1000 genomes]
rs6940256	0.85[AMR][1000 genomes]
rs6940415	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940752	0.83[AMR][1000 genomes]
rs6940930	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs73564486	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566115	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566121	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566126	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566157	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566168	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566721	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566724	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566728	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566742	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566747	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566751	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566754	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566757	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568127	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73568130	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568133	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568134	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568138	0.98[AFR][1000 genomes]
rs73568145	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568148	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568151	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568185	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568188	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568362	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568366	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568375	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568383	0.83[AMR][1000 genomes]
rs73568384	0.83[AMR][1000 genomes]
rs73568389	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568402	0.83[AMR][1000 genomes]
rs73570006	0.85[AMR][1000 genomes]
rs73570010	0.85[AMR][1000 genomes]
rs73570033	0.85[AMR][1000 genomes]
rs73570037	0.85[AMR][1000 genomes]
rs73572161	0.85[AMR][1000 genomes]
rs73577358	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577363	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577384	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73579444	0.83[AMR][1000 genomes]
rs73579478	0.89[AFR][1000 genomes]
rs73579483	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73579498	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782068	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784038	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73784067	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738406	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738822	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738906	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7741139	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744082	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745379	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745722	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749377	0.83[AMR][1000 genomes]
rs7750382	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7751866	0.83[AMR][1000 genomes]
rs7753694	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7753832	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754367	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7757137	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7758839	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759254	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7761251	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761577	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768195	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7771112	0.90[AFR][1000 genomes]
rs7771653	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772012	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772550	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7773780	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs9718033	0.91[AMR][1000 genomes]
rs9766595	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9766596	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3424432	chr6:146041308-146057603	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:146007400-146043800	Weak transcription	Liver	Liver
3	chr6:146026800-146055800	Weak transcription	Left Ventricle	heart
4	chr6:146028600-146049200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:146030200-146054000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:146035800-146055200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:146036200-146044200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:146036200-146049800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:146036200-146054800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:146036600-146044600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:146036800-146050000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:146036800-146050000	Weak transcription	Thymus	Thymus
13	chr6:146037000-146052000	Weak transcription	Ovary	ovary
14	chr6:146037800-146044800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:146038400-146052600	Weak transcription	Fetal Heart	heart
16	chr6:146041400-146043800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:146041800-146050000	Weak transcription	Fetal Stomach	stomach
18	chr6:146042000-146044800	Weak transcription	Primary B cells from cord blood	blood
19	chr6:146043600-146044000	ZNF genes & repeats	Primary T cells from cord blood	blood

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