Variant report

Variant	rs61121433
Chromosome Location	chr6:145951190-145951191
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145942233..145945341-chr6:145949543..145951828,3	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs12111090	0.95[AFR][1000 genomes]
rs12111476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591698	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28479261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587324	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28829296	0.93[AFR][1000 genomes]
rs4896845	0.82[AFR][1000 genomes]
rs4896847	0.82[AFR][1000 genomes]
rs55658016	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55746945	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55813779	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55814547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55820518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56116838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198487	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282473	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56864636	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56950953	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57105639	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57646957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58588227	0.88[AFR][1000 genomes]
rs59135568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59557516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60162832	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60609437	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61014905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61041405	0.95[AFR][1000 genomes]
rs6570702	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6570704	1.00[AMR][1000 genomes]
rs6570707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570710	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570714	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570720	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6900158	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6901219	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6901587	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902358	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902952	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6904060	1.00[AMR][1000 genomes]
rs6908707	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913497	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6914491	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6918350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920248	0.89[AFR][1000 genomes]
rs6921110	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6925420	1.00[AMR][1000 genomes]
rs6927960	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6928780	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6930335	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6931280	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940415	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940752	1.00[AMR][1000 genomes]
rs6940930	1.00[AMR][1000 genomes]
rs73562628	1.00[AMR][1000 genomes]
rs73564486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566113	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566115	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566121	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566126	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566139	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566140	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566157	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566168	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566742	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566747	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566751	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568127	0.88[AFR][1000 genomes]
rs73568130	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568133	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568134	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568138	0.88[AFR][1000 genomes]
rs73568145	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568148	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568151	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568185	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568188	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568362	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568366	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568375	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568383	1.00[AMR][1000 genomes]
rs73568384	1.00[AMR][1000 genomes]
rs73568389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568402	1.00[AMR][1000 genomes]
rs73577358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579444	1.00[AMR][1000 genomes]
rs73579478	0.94[AFR][1000 genomes]
rs73579483	0.96[AFR][1000 genomes]
rs73579498	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782053	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782068	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73784038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784067	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738406	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738822	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741139	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7744082	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745379	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745722	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7749377	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7751866	1.00[AMR][1000 genomes]
rs7753694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753832	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7754367	0.89[AFR][1000 genomes]
rs7757137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758839	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7759254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761251	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7761577	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7763273	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7768195	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771112	0.81[AFR][1000 genomes]
rs7771653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772550	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773780	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9718033	0.83[AFR][1000 genomes]
rs9766595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9766596	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933782	chr6:145946431-145956458	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145937600-145952000	Weak transcription	Psoas Muscle	Psoas
2	chr6:145941600-145954200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:145942400-145955400	Weak transcription	Esophagus	oesophagus
4	chr6:145945200-145955400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:145945800-145955000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:145946000-145951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:145946200-145955000	Weak transcription	Stomach Mucosa	stomach
8	chr6:145946400-145955600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:145946800-145952400	Weak transcription	Fetal Brain Female	brain
10	chr6:145946800-145955400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:145947000-145955400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:145947000-145955800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:145947200-145955400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:145947400-145952200	Strong transcription	Primary T cells from cord blood	blood
15	chr6:145947400-145955400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:145948000-145951200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:145948600-145954600	Weak transcription	Brain Anterior Caudate	brain
18	chr6:145948800-145952000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:145948800-145955400	Weak transcription	Brain Substantia Nigra	brain
20	chr6:145948800-145955400	Weak transcription	Right Ventricle	heart
21	chr6:145948800-145962400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:145949000-145952400	Weak transcription	Gastric	stomach
23	chr6:145949000-145952800	Weak transcription	Right Atrium	heart
24	chr6:145949000-145953400	Weak transcription	Left Ventricle	heart
25	chr6:145949000-145955400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:145949000-145955400	Weak transcription	Brain Angular Gyrus	brain
27	chr6:145949000-145955400	Weak transcription	Pancreas	Pancrea
28	chr6:145949000-145956200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:145949000-145968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:145949200-145951800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:145949200-145955400	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:145949200-145955600	Weak transcription	Fetal Thymus	thymus
33	chr6:145950000-145951200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:145950200-145951200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:145950200-145951400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:145950400-145951200	Strong transcription	Primary hematopoietic stem cells	blood
37	chr6:145950400-145955400	Weak transcription	Spleen	Spleen
38	chr6:145950400-145955600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:145950600-145951200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr6:145950600-145951200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:145950600-145951200	ZNF genes & repeats	Lung	lung
42	chr6:145950600-145955400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr6:145950800-145953200	Weak transcription	Adipose Nuclei	Adipose
44	chr6:145950800-145955000	Weak transcription	Liver	Liver
45	chr6:145950800-145955400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:145950800-145955600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:145950800-145977400	Weak transcription	Aorta	Aorta
48	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
49	chr6:145951000-145951400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:145951000-145952600	Weak transcription	Fetal Stomach	stomach

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