The 2.0 version of rSNPBase

Variant report

Variant rs58588227
Chromosome Location chr6:146052751-146052752
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:146026800-146055800 Weak transcription Left Ventricle heart
2 chr6:146030200-146054000 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr6:146035800-146055200 Weak transcription Brain Inferior Temporal Lobe brain
4 chr6:146036200-146054800 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr6:146045000-146055200 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr6:146045600-146054800 Weak transcription Primary T cells from cord blood blood
7 chr6:146047800-146055000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr6:146050000-146055000 Weak transcription Fetal Lung lung
9 chr6:146050200-146055000 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr6:146050400-146055600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr6:146050600-146053000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr6:146050600-146055000 Weak transcription Adipose Nuclei Adipose
13 chr6:146050600-146055000 Weak transcription Fetal Stomach stomach
14 chr6:146050600-146055000 Weak transcription Thymus Thymus
15 chr6:146050600-146055200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr6:146050600-146055800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr6:146050800-146054000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr6:146050800-146054800 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr6:146050800-146054800 Weak transcription Brain Germinal Matrix brain
20 chr6:146050800-146055000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr6:146050800-146055200 Weak transcription Fetal Muscle Leg muscle
22 chr6:146051000-146055000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr6:146051000-146055600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr6:146051200-146052800 ZNF genes & repeats GM12878-XiMat blood
25 chr6:146051200-146054800 Weak transcription Stomach Smooth Muscle stomach
26 chr6:146051200-146055000 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr6:146051400-146054000 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr6:146051400-146054800 Weak transcription Primary hematopoietic stem cells blood
29 chr6:146051400-146054800 Weak transcription HepG2 liver
30 chr6:146051600-146053200 Weak transcription Colon Smooth Muscle Colon
31 chr6:146051600-146055000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr6:146051800-146053200 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr6:146051800-146054000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr6:146052000-146052800 Enhancers Aorta Aorta
35 chr6:146052000-146052800 Enhancers Gastric stomach
36 chr6:146052000-146053600 Enhancers Psoas Muscle Psoas
37 chr6:146052200-146055000 Weak transcription Primary B cells from peripheral blood blood
38 chr6:146052400-146054800 Enhancers Dnd41 blood
39 chr6:146052400-146054800 Enhancers K562 blood
40 chr6:146052600-146052800 Enhancers HUES6 Cell Line embryonic stem cell
41 chr6:146052600-146052800 Enhancers Ovary ovary
42 chr6:146052600-146053000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr6:146052600-146053400 Enhancers Fetal Heart heart
44 chr6:146052600-146053800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr6:146052600-146054000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015