Variant report

Variant	rs12111090
Chromosome Location	chr6:146009066-146009067
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs12111476	0.84[YRI][hapmap];0.95[AFR][1000 genomes]
rs1591698	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28479261	0.92[AFR][1000 genomes]
rs28587324	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28829296	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4896845	0.82[AFR][1000 genomes]
rs4896847	0.82[AFR][1000 genomes]
rs55658016	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs55746945	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs55813779	0.94[AFR][1000 genomes]
rs55814547	0.94[AFR][1000 genomes]
rs55820518	0.89[AFR][1000 genomes]
rs56116838	0.95[AFR][1000 genomes]
rs56198487	0.88[AFR][1000 genomes]
rs56282473	0.94[AFR][1000 genomes]
rs56864636	0.88[AFR][1000 genomes]
rs56950953	0.94[AFR][1000 genomes]
rs57105639	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57646957	0.92[AFR][1000 genomes]
rs58588227	0.88[AFR][1000 genomes]
rs59135568	0.95[AFR][1000 genomes]
rs59557516	0.92[AFR][1000 genomes]
rs60162832	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60609437	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61014905	0.92[AFR][1000 genomes]
rs61041405	0.90[AFR][1000 genomes]
rs61121433	0.95[AFR][1000 genomes]
rs6570702	0.84[YRI][hapmap];0.95[AFR][1000 genomes]
rs6570704	0.81[YRI][hapmap]
rs6570707	0.95[AFR][1000 genomes]
rs6570709	0.84[YRI][hapmap];0.95[AFR][1000 genomes]
rs6570710	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6570714	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6570720	0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6900158	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6901219	0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6901587	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6902273	0.95[AFR][1000 genomes]
rs6902358	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6902952	0.85[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6908707	0.94[AFR][1000 genomes]
rs6913497	0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6914491	0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6918350	0.85[YRI][hapmap];0.95[AFR][1000 genomes]
rs6918739	0.92[AFR][1000 genomes]
rs6919173	0.84[YRI][hapmap];0.95[AFR][1000 genomes]
rs6920248	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs6921110	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6927960	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6928780	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6930335	0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6931280	0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6940415	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6940930	0.81[YRI][hapmap]
rs73564486	0.92[AFR][1000 genomes]
rs73566113	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73566115	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73566121	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73566126	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73566139	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73566140	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73566157	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73566168	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73566721	0.89[AFR][1000 genomes]
rs73566724	0.92[AFR][1000 genomes]
rs73566728	0.92[AFR][1000 genomes]
rs73566742	0.92[AFR][1000 genomes]
rs73566747	0.92[AFR][1000 genomes]
rs73566751	0.92[AFR][1000 genomes]
rs73566754	0.92[AFR][1000 genomes]
rs73566757	0.90[AFR][1000 genomes]
rs73568127	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73568130	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73568133	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73568134	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73568138	0.88[AFR][1000 genomes]
rs73568145	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73568148	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73568151	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73568185	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73568188	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73568362	0.94[AFR][1000 genomes]
rs73568366	0.94[AFR][1000 genomes]
rs73568375	0.94[AFR][1000 genomes]
rs73568389	0.87[AFR][1000 genomes]
rs73577358	0.95[AFR][1000 genomes]
rs73577363	0.95[AFR][1000 genomes]
rs73577384	0.95[AFR][1000 genomes]
rs73579478	0.94[AFR][1000 genomes]
rs73579483	0.96[AFR][1000 genomes]
rs73579498	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73782053	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73782068	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73784038	0.92[AFR][1000 genomes]
rs73784067	0.94[AFR][1000 genomes]
rs7738406	0.94[AFR][1000 genomes]
rs7738822	0.94[AFR][1000 genomes]
rs7738906	0.94[AFR][1000 genomes]
rs7741139	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7744082	0.85[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7745379	0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7745722	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7749377	0.83[AFR][1000 genomes]
rs7750382	0.92[AFR][1000 genomes]
rs7753694	0.84[YRI][hapmap];0.95[AFR][1000 genomes]
rs7753832	0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7754367	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7757137	0.88[AFR][1000 genomes]
rs7758839	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7759254	0.90[AFR][1000 genomes]
rs7761251	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7761577	0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7763273	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7768195	0.94[AFR][1000 genomes]
rs7771112	0.86[AFR][1000 genomes]
rs7771653	0.92[AFR][1000 genomes]
rs7772012	0.95[AFR][1000 genomes]
rs7772550	0.94[AFR][1000 genomes]
rs7773780	0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9718033	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9766595	0.93[AFR][1000 genomes]
rs9766596	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145980600-146010800	Weak transcription	Right Ventricle	heart
2	chr6:145991800-146009200	Weak transcription	NHDF-Ad	bronchial
3	chr6:145995000-146010800	Weak transcription	Left Ventricle	heart
4	chr6:145995200-146013200	Weak transcription	Pancreas	Pancrea
5	chr6:145998800-146010800	Weak transcription	HSMMtube	muscle
6	chr6:145999000-146010800	Weak transcription	Psoas Muscle	Psoas
7	chr6:146000600-146010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:146001800-146012200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:146002400-146009400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:146003400-146009400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:146003400-146010800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:146003400-146011600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:146003400-146033600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:146003600-146009400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:146003600-146009600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:146003600-146009600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:146003600-146010800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:146003600-146010800	Weak transcription	Aorta	Aorta
19	chr6:146003600-146020600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:146003600-146029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:146003800-146009200	Weak transcription	Thymus	Thymus
22	chr6:146003800-146009800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:146003800-146012200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:146003800-146012400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:146003800-146026600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:146003800-146029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:146003800-146029600	Weak transcription	Ovary	ovary
28	chr6:146004000-146009400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:146006000-146009600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:146006800-146014800	Weak transcription	Adipose Nuclei	Adipose
31	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:146007000-146022400	Weak transcription	Primary B cells from cord blood	blood
33	chr6:146007400-146043800	Weak transcription	Liver	Liver
34	chr6:146007600-146011000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:146007800-146013600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:146008400-146009400	Weak transcription	Fetal Heart	heart
37	chr6:146008400-146009600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:146008400-146011200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr6:146008600-146015600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:146009000-146010600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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