Variant report

Variant	rs6940930
Chromosome Location	chr6:145965903-145965904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145965389..145967429-chr6:146126660..146128334,2	K562	blood:

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs12111090	0.81[YRI][hapmap]
rs12111476	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs1591698	0.83[AMR][1000 genomes]
rs28479261	1.00[AMR][1000 genomes]
rs28587324	0.83[AMR][1000 genomes]
rs55658016	0.83[AMR][1000 genomes]
rs55746945	0.83[AMR][1000 genomes]
rs55813779	1.00[AMR][1000 genomes]
rs55814547	1.00[AMR][1000 genomes]
rs55820518	1.00[AMR][1000 genomes]
rs56116838	1.00[AMR][1000 genomes]
rs56198487	1.00[AMR][1000 genomes]
rs56282473	1.00[AMR][1000 genomes]
rs56864636	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56950953	1.00[AMR][1000 genomes]
rs57105639	0.83[AMR][1000 genomes]
rs57646957	1.00[AMR][1000 genomes]
rs59135568	1.00[AMR][1000 genomes]
rs59557516	1.00[AMR][1000 genomes]
rs60162832	0.83[AMR][1000 genomes]
rs60609437	0.83[AMR][1000 genomes]
rs61014905	1.00[AMR][1000 genomes]
rs61121433	1.00[AMR][1000 genomes]
rs6570702	0.95[YRI][hapmap];0.92[AMR][1000 genomes]
rs6570704	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570707	1.00[AMR][1000 genomes]
rs6570709	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs6570710	0.83[AMR][1000 genomes]
rs6570714	0.83[AMR][1000 genomes]
rs6570720	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs6900158	0.83[AMR][1000 genomes]
rs6901219	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6901587	0.83[AMR][1000 genomes]
rs6902273	1.00[AMR][1000 genomes]
rs6902358	0.83[AMR][1000 genomes]
rs6902952	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6904060	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908707	1.00[AMR][1000 genomes]
rs6913497	0.94[YRI][hapmap];0.83[AMR][1000 genomes]
rs6914491	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs6918350	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs6918739	1.00[AMR][1000 genomes]
rs6919173	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs6920248	0.95[YRI][hapmap]
rs6921110	0.83[AMR][1000 genomes]
rs6925420	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6927960	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs6928780	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs6930335	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6931280	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6940415	0.83[AMR][1000 genomes]
rs6940752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73562628	1.00[AMR][1000 genomes]
rs73564486	1.00[AMR][1000 genomes]
rs73566113	0.83[AMR][1000 genomes]
rs73566115	0.83[AMR][1000 genomes]
rs73566121	0.83[AMR][1000 genomes]
rs73566126	0.83[AMR][1000 genomes]
rs73566139	0.83[AMR][1000 genomes]
rs73566140	0.83[AMR][1000 genomes]
rs73566157	0.83[AMR][1000 genomes]
rs73566168	0.83[AMR][1000 genomes]
rs73566721	1.00[AMR][1000 genomes]
rs73566724	1.00[AMR][1000 genomes]
rs73566728	1.00[AMR][1000 genomes]
rs73566742	1.00[AMR][1000 genomes]
rs73566747	1.00[AMR][1000 genomes]
rs73566751	1.00[AMR][1000 genomes]
rs73566754	1.00[AMR][1000 genomes]
rs73566757	1.00[AMR][1000 genomes]
rs73568130	0.83[AMR][1000 genomes]
rs73568133	0.83[AMR][1000 genomes]
rs73568134	0.83[AMR][1000 genomes]
rs73568145	0.83[AMR][1000 genomes]
rs73568148	0.83[AMR][1000 genomes]
rs73568151	0.83[AMR][1000 genomes]
rs73568185	0.83[AMR][1000 genomes]
rs73568188	0.83[AMR][1000 genomes]
rs73568362	1.00[AMR][1000 genomes]
rs73568366	1.00[AMR][1000 genomes]
rs73568375	1.00[AMR][1000 genomes]
rs73568383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577358	1.00[AMR][1000 genomes]
rs73577363	1.00[AMR][1000 genomes]
rs73577384	1.00[AMR][1000 genomes]
rs73579444	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579498	0.83[AMR][1000 genomes]
rs73782053	0.83[AMR][1000 genomes]
rs73782068	0.83[AMR][1000 genomes]
rs73784038	1.00[AMR][1000 genomes]
rs73784067	1.00[AMR][1000 genomes]
rs7738406	1.00[AMR][1000 genomes]
rs7738822	1.00[AMR][1000 genomes]
rs7738906	1.00[AMR][1000 genomes]
rs7741139	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs7744082	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs7745379	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs7745722	0.83[AMR][1000 genomes]
rs7749377	1.00[AMR][1000 genomes]
rs7750382	1.00[AMR][1000 genomes]
rs7751866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753694	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs7753832	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs7757137	1.00[AMR][1000 genomes]
rs7758839	0.83[AMR][1000 genomes]
rs7759254	1.00[AMR][1000 genomes]
rs7761251	0.83[AMR][1000 genomes]
rs7761577	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs7763273	0.83[AMR][1000 genomes]
rs7768195	1.00[AMR][1000 genomes]
rs7771653	1.00[AMR][1000 genomes]
rs7772012	1.00[AMR][1000 genomes]
rs7772550	1.00[AMR][1000 genomes]
rs7773780	0.85[YRI][hapmap];0.91[AMR][1000 genomes]
rs9766595	1.00[AMR][1000 genomes]
rs9766596	1.00[AMR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145949000-145968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:145950800-145977400	Weak transcription	Aorta	Aorta
3	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
5	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:145952200-145983200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:145955200-145976800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:145955600-145977400	Weak transcription	Left Ventricle	heart
9	chr6:145960200-145978800	Weak transcription	Fetal Heart	heart
10	chr6:145963000-145966400	Weak transcription	Psoas Muscle	Psoas

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