Variant report

Variant	rs7741139
Chromosome Location	chr6:146053465-146053466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146051601..146058492-chr6:146282422..146286666,8	K562	blood:
2	chr6:146052203..146054409-chr6:146284749..146287037,2	K562	blood:
3	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
4	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

Variant related genes	Relation type
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000146414	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs12111090	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12111476	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1591698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479261	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28587324	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28829296	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4896845	0.93[AFR][1000 genomes]
rs4896847	0.93[AFR][1000 genomes]
rs55658016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55746945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55813779	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55814547	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55820518	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56116838	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56198487	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56241331	0.83[AFR][1000 genomes]
rs56282473	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56864636	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56950953	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56954340	0.85[AMR][1000 genomes]
rs57057101	0.85[AMR][1000 genomes]
rs57105639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57646957	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58588227	0.99[AFR][1000 genomes]
rs59135568	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59557516	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60162832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60609437	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60875801	0.86[AFR][1000 genomes]
rs61014905	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61041405	0.84[AFR][1000 genomes]
rs61121433	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570702	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6570704	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs6570707	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570709	0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570714	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570720	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900158	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900565	0.85[AMR][1000 genomes]
rs6901219	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901587	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902273	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902358	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902952	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904060	0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs6908707	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6913497	0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914491	0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918350	0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6918739	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6919173	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6920248	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs6921110	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925420	0.83[AMR][1000 genomes]
rs6927960	0.81[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928780	0.83[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930335	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931280	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938895	0.85[AMR][1000 genomes]
rs6940256	0.85[AMR][1000 genomes]
rs6940415	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940752	0.83[AMR][1000 genomes]
rs6940930	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs73564486	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566113	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566115	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566121	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566139	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566140	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566721	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566724	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566728	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566742	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566747	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566751	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566754	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566757	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568127	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73568130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568138	0.99[AFR][1000 genomes]
rs73568145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568148	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568185	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568188	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568362	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568366	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568375	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568383	0.83[AMR][1000 genomes]
rs73568384	0.83[AMR][1000 genomes]
rs73568389	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568402	0.83[AMR][1000 genomes]
rs73570006	0.85[AMR][1000 genomes]
rs73570010	0.85[AMR][1000 genomes]
rs73570033	0.85[AMR][1000 genomes]
rs73570037	0.85[AMR][1000 genomes]
rs73572161	0.85[AMR][1000 genomes]
rs73577358	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577363	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577384	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73579444	0.83[AMR][1000 genomes]
rs73579478	0.88[AFR][1000 genomes]
rs73579483	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73579498	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782053	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784038	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73784067	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738406	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738822	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738906	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7744082	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745379	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7745722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749377	0.83[AMR][1000 genomes]
rs7750382	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7751866	0.83[AMR][1000 genomes]
rs7753694	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7753832	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754367	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7757137	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7758839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759254	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7761251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7761577	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763273	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768195	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7771112	0.92[AFR][1000 genomes]
rs7771653	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772012	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772550	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7773780	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs9718033	0.91[AMR][1000 genomes]
rs9766595	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9766596	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424432	chr6:146041308-146057603	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146026800-146055800	Weak transcription	Left Ventricle	heart
2	chr6:146030200-146054000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:146035800-146055200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:146036200-146054800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:146045000-146055200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:146045600-146054800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:146047800-146055000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:146050000-146055000	Weak transcription	Fetal Lung	lung
9	chr6:146050200-146055000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:146050400-146055600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:146050600-146055000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:146050600-146055000	Weak transcription	Fetal Stomach	stomach
13	chr6:146050600-146055000	Weak transcription	Thymus	Thymus
14	chr6:146050600-146055200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:146050600-146055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:146050800-146054000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:146050800-146054800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:146050800-146054800	Weak transcription	Brain Germinal Matrix	brain
19	chr6:146050800-146055000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:146050800-146055200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:146051000-146055000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:146051000-146055600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:146051200-146054800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:146051200-146055000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:146051400-146054000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:146051400-146054800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:146051400-146054800	Weak transcription	HepG2	liver
28	chr6:146051600-146055000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:146051800-146054000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:146052000-146053600	Enhancers	Psoas Muscle	Psoas
31	chr6:146052200-146055000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr6:146052400-146054800	Enhancers	Dnd41	blood
33	chr6:146052400-146054800	Enhancers	K562	blood
34	chr6:146052600-146053800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:146052600-146054000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:146052800-146053600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:146052800-146054000	Weak transcription	GM12878-XiMat	blood
38	chr6:146052800-146055200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:146052800-146055600	Weak transcription	Aorta	Aorta
40	chr6:146052800-146055600	Weak transcription	Ovary	ovary
41	chr6:146052800-146055800	Weak transcription	Gastric	stomach
42	chr6:146053000-146054800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:146053000-146054800	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr6:146053000-146055000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr6:146053000-146055000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:146053200-146054200	Enhancers	Colon Smooth Muscle	Colon
47	chr6:146053200-146054200	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr6:146053200-146055000	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr6:146053400-146055000	Weak transcription	Fetal Heart	heart

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