Variant report

Variant	rs6570720
Chromosome Location	chr6:146105897-146105898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146105593..146108141-chr6:146123626..146125725,2	K562	blood:
2	chr6:146104913..146106752-chr6:146135107..146136869,2	K562	blood:

Variant related genes	Relation type
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs12111090	0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12111476	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1591698	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479261	0.83[AMR][1000 genomes]
rs28587324	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28829296	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4896845	0.98[AFR][1000 genomes]
rs4896847	0.98[AFR][1000 genomes]
rs55658016	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55746945	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55813779	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55814547	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55820518	0.83[AMR][1000 genomes]
rs56116838	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56198487	0.83[AMR][1000 genomes]
rs56241331	0.86[AFR][1000 genomes]
rs56282473	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56864636	0.83[AMR][1000 genomes]
rs56950953	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56954340	0.85[AMR][1000 genomes]
rs57057101	0.85[AMR][1000 genomes]
rs57105639	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57646957	0.83[AMR][1000 genomes]
rs58588227	0.92[AFR][1000 genomes]
rs59135568	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60162832	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60609437	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61014905	0.83[AMR][1000 genomes]
rs61121433	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570702	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6570704	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs6570707	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570709	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570710	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900565	0.85[AMR][1000 genomes]
rs6901219	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901587	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902273	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902358	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902952	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904060	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs6908707	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6913497	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914491	0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918350	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6918739	0.83[AMR][1000 genomes]
rs6919173	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6920248	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs6921110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925420	0.83[AMR][1000 genomes]
rs6927960	0.81[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928780	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930335	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931280	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938895	0.85[AMR][1000 genomes]
rs6940256	0.85[AMR][1000 genomes]
rs6940415	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940752	0.83[AMR][1000 genomes]
rs6940930	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs73566113	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566121	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566139	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566140	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566157	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566721	0.83[AMR][1000 genomes]
rs73566724	0.83[AMR][1000 genomes]
rs73566728	0.83[AMR][1000 genomes]
rs73566742	0.83[AMR][1000 genomes]
rs73566747	0.83[AMR][1000 genomes]
rs73566751	0.83[AMR][1000 genomes]
rs73566754	0.83[AMR][1000 genomes]
rs73566757	0.83[AMR][1000 genomes]
rs73568127	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73568130	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568138	0.92[AFR][1000 genomes]
rs73568145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568148	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568151	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568185	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568362	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568366	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568375	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568383	0.83[AMR][1000 genomes]
rs73568384	0.83[AMR][1000 genomes]
rs73568389	0.83[AMR][1000 genomes]
rs73568402	0.83[AMR][1000 genomes]
rs73570006	0.85[AMR][1000 genomes]
rs73570010	0.85[AMR][1000 genomes]
rs73570033	0.85[AMR][1000 genomes]
rs73570037	0.85[AMR][1000 genomes]
rs73572161	0.85[AMR][1000 genomes]
rs73577358	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577363	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577384	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73579444	0.83[AMR][1000 genomes]
rs73579478	0.81[AFR][1000 genomes]
rs73579483	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73579498	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782053	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782068	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784067	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738406	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738822	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738906	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7741139	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744082	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745379	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745722	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749377	0.83[AMR][1000 genomes]
rs7750382	0.83[AMR][1000 genomes]
rs7751866	0.83[AMR][1000 genomes]
rs7753694	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7753832	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754367	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7758839	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759254	0.83[AMR][1000 genomes]
rs7761251	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761577	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763273	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768195	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7771112	0.85[AFR][1000 genomes]
rs7771653	0.83[AMR][1000 genomes]
rs7772012	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772550	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7773780	0.89[YRI][hapmap]
rs9718033	0.91[AMR][1000 genomes]
rs9766595	0.83[AMR][1000 genomes]
rs9766596	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146099800-146106000	Weak transcription	Pancreas	Pancrea
2	chr6:146100000-146106000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:146100600-146123200	Weak transcription	HUVEC	blood vessel
4	chr6:146101000-146112200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:146101400-146106000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:146101400-146109400	Weak transcription	Gastric	stomach
7	chr6:146101400-146110000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:146101400-146110800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:146101600-146106200	Weak transcription	Left Ventricle	heart
10	chr6:146101600-146110000	Weak transcription	Fetal Lung	lung
11	chr6:146101800-146114000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:146102400-146110600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:146103000-146106200	Weak transcription	HSMMtube	muscle
14	chr6:146103000-146109200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:146103000-146119400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:146103200-146106000	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:146103400-146107600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:146103800-146109400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:146104000-146106200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:146104400-146106000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:146104400-146111200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:146104600-146106000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:146104600-146106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:146104600-146106200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:146104600-146106200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:146104600-146106200	Enhancers	Dnd41	blood
27	chr6:146104600-146118800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:146104800-146108200	Weak transcription	HepG2	liver
30	chr6:146104800-146109600	Weak transcription	Brain Angular Gyrus	brain
31	chr6:146104800-146110200	Weak transcription	Spleen	Spleen
32	chr6:146104800-146111400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:146104800-146112400	Weak transcription	Right Atrium	heart
34	chr6:146105000-146106000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:146105000-146108200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:146105000-146123200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:146105200-146106200	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr6:146105200-146106400	Enhancers	Fetal Heart	heart
39	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
40	chr6:146105400-146108000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:146105400-146112000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:146105600-146106000	Active TSS	Colon Smooth Muscle	Colon
44	chr6:146105600-146106000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr6:146105600-146106400	Enhancers	GM12878-XiMat	blood
46	chr6:146105600-146107000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr6:146105600-146107000	Strong transcription	Brain Germinal Matrix	brain
48	chr6:146105600-146107000	Strong transcription	Fetal Brain Female	brain
49	chr6:146105600-146107000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:146105600-146119000	Weak transcription	NH-A	brain

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