Variant report

Variant	rs7761577
Chromosome Location	chr6:146079683-146079684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:146055254..146056868-chr6:146078510..146080192,2	K562	blood:
2	chr6:146055254..146057948-chr6:146078692..146080698,2	K562	blood:
3	chr6:146078233..146080576-chr6:146117352..146119241,2	K562	blood:
4	chr6:146071338..146074051-chr6:146075852..146079781,4	K562	blood:
5	chr6:146077264..146080093-chr6:146082462..146084742,2	K562	blood:
6	chr6:146054115..146058275-chr6:146075564..146080961,9	MCF-7	breast:
7	chr6:146077433..146080093-chr6:146081653..146083962,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs12111090	0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12111476	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1591698	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479261	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28587324	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28829296	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4896845	0.99[AFR][1000 genomes]
rs4896847	0.99[AFR][1000 genomes]
rs55658016	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55746945	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55813779	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55814547	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55820518	0.83[AMR][1000 genomes]
rs56116838	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56198487	0.83[AMR][1000 genomes]
rs56241331	0.87[AFR][1000 genomes]
rs56282473	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56864636	0.83[AMR][1000 genomes]
rs56950953	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56954340	0.85[AMR][1000 genomes]
rs57057101	0.85[AMR][1000 genomes]
rs57105639	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57646957	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58588227	0.93[AFR][1000 genomes]
rs59135568	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59557516	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60162832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60609437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61014905	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61121433	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570702	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6570704	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6570707	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570709	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570710	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570714	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570720	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900158	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900565	0.85[AMR][1000 genomes]
rs6901219	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902273	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902952	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904060	1.00[MEX][hapmap];0.94[MKK][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs6908707	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6913497	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914491	0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914746	0.83[LWK][hapmap]
rs6918350	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6918739	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6919173	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6920248	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6921110	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921551	0.83[LWK][hapmap]
rs6925420	0.83[AMR][1000 genomes]
rs6927960	0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928780	0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930335	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931280	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938028	0.83[LWK][hapmap]
rs6938895	0.83[LWK][hapmap];0.85[AMR][1000 genomes]
rs6940256	0.85[AMR][1000 genomes]
rs6940415	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940752	0.83[AMR][1000 genomes]
rs6940930	0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs73564486	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566115	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566121	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566126	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566140	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566721	0.83[AMR][1000 genomes]
rs73566724	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566728	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566742	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566747	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566751	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566754	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566757	0.83[AMR][1000 genomes]
rs73568127	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73568130	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568133	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568134	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568138	0.93[AFR][1000 genomes]
rs73568145	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568148	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568151	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568185	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568188	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568362	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568366	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568375	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568383	0.83[AMR][1000 genomes]
rs73568384	0.83[AMR][1000 genomes]
rs73568389	0.83[AMR][1000 genomes]
rs73568402	0.83[AMR][1000 genomes]
rs73570006	0.85[AMR][1000 genomes]
rs73570010	0.85[AMR][1000 genomes]
rs73570033	0.85[AMR][1000 genomes]
rs73570037	0.85[AMR][1000 genomes]
rs73572161	0.85[AMR][1000 genomes]
rs73577358	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577363	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577384	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73579444	0.83[AMR][1000 genomes]
rs73579478	0.83[AFR][1000 genomes]
rs73579483	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73579498	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782053	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782068	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784038	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73784067	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738406	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738822	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738906	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7741139	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744082	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745379	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745722	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749377	0.83[AMR][1000 genomes]
rs7750382	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7751866	0.83[AMR][1000 genomes]
rs7753694	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7753832	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754367	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7756614	0.86[MKK][hapmap]
rs7757137	0.83[AMR][1000 genomes]
rs7758839	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759254	0.83[AMR][1000 genomes]
rs7761251	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763273	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768195	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7771112	0.86[AFR][1000 genomes]
rs7771653	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772012	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772550	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7773780	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs9718033	0.91[AMR][1000 genomes]
rs9766595	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9766596	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146077400-146079800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:146079000-146081000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:146079200-146079800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:146079200-146080000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:146079400-146080000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:146079400-146080000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:146079600-146079800	Enhancers	HSMM	muscle

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