Variant report

Variant	rs7756614
Chromosome Location	chr6:146018717-146018718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12111476	0.89[MKK][hapmap]
rs6570690	0.86[AFR][1000 genomes]
rs6570702	0.89[MKK][hapmap]
rs6900364	0.86[YRI][hapmap]
rs6904060	0.86[MKK][hapmap]
rs6919173	0.89[MKK][hapmap]
rs6925909	0.86[YRI][hapmap]
rs6930335	0.89[MKK][hapmap]
rs7753694	0.89[MKK][hapmap]
rs7754527	0.84[AFR][1000 genomes]
rs7761577	0.86[MKK][hapmap]
rs7761877	1.00[ASW][hapmap];0.86[YRI][hapmap]
rs7773780	0.89[MKK][hapmap]
rs9766502	0.83[AFR][1000 genomes]
rs9767028	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146003400-146033600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:146003600-146020600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:146003600-146029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:146003800-146026600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:146003800-146029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:146003800-146029600	Weak transcription	Ovary	ovary
7	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:146007000-146022400	Weak transcription	Primary B cells from cord blood	blood
9	chr6:146007400-146043800	Weak transcription	Liver	Liver
10	chr6:146009600-146022400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:146011200-146020000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:146011200-146029600	Weak transcription	Aorta	Aorta
13	chr6:146016000-146026800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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