Variant report

Variant	rs7753694
Chromosome Location	chr6:145948389-145948390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs12111090	0.84[YRI][hapmap];0.95[AFR][1000 genomes]
rs12111476	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591698	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28479261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587324	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28829296	0.93[AFR][1000 genomes]
rs4896845	0.82[AFR][1000 genomes]
rs4896847	0.82[AFR][1000 genomes]
rs55658016	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55746945	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55813779	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55814547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55820518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56116838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198487	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282473	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56864636	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56950953	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57105639	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57646957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58588227	0.88[AFR][1000 genomes]
rs59135568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59557516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60162832	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60609437	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61014905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61041405	0.95[AFR][1000 genomes]
rs61121433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570702	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6570704	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs6570707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570709	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570710	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570714	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570720	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6900158	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6901219	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6901587	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902358	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902952	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6904060	0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs6908707	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913497	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6914491	0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6914746	0.81[LWK][hapmap]
rs6918350	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919173	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920248	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6921110	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6921551	0.81[LWK][hapmap]
rs6925420	1.00[AMR][1000 genomes]
rs6927960	0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6928780	0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6930335	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6931280	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6938028	0.81[LWK][hapmap]
rs6938895	0.81[LWK][hapmap]
rs6940415	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940752	1.00[AMR][1000 genomes]
rs6940930	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs73562628	1.00[AMR][1000 genomes]
rs73564486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566113	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566115	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566121	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566126	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566139	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566140	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566157	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566168	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566742	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566747	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566751	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568127	0.88[AFR][1000 genomes]
rs73568130	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568133	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568134	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568138	0.88[AFR][1000 genomes]
rs73568145	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568148	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568151	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568185	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568188	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568362	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568366	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568375	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568383	1.00[AMR][1000 genomes]
rs73568384	1.00[AMR][1000 genomes]
rs73568389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568402	1.00[AMR][1000 genomes]
rs73577358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579444	1.00[AMR][1000 genomes]
rs73579478	0.94[AFR][1000 genomes]
rs73579483	0.96[AFR][1000 genomes]
rs73579498	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782053	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782068	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73784038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784067	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738406	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738822	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741139	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7744082	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745379	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745722	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7749377	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7751866	1.00[AMR][1000 genomes]
rs7753832	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7754367	0.89[AFR][1000 genomes]
rs7756614	0.89[MKK][hapmap]
rs7757137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758839	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7759254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761251	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7761577	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7763273	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7768195	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771112	0.81[AFR][1000 genomes]
rs7771653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772550	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773780	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9718033	0.83[AFR][1000 genomes]
rs9766595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9766596	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933782	chr6:145946431-145956458	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145937600-145952000	Weak transcription	Psoas Muscle	Psoas
2	chr6:145939800-145948400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:145941600-145954200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:145942400-145955400	Weak transcription	Esophagus	oesophagus
5	chr6:145943600-145948400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:145944200-145949800	Weak transcription	GM12878-XiMat	blood
7	chr6:145945200-145950200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:145945200-145955400	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:145945400-145949000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:145945800-145955000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:145946000-145949600	Weak transcription	Liver	Liver
12	chr6:145946000-145951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:145946200-145955000	Weak transcription	Stomach Mucosa	stomach
14	chr6:145946400-145950400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:145946400-145950400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:145946400-145955600	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:145946600-145949800	Weak transcription	Spleen	Spleen
18	chr6:145946800-145948800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:145946800-145950600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:145946800-145950600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:145946800-145950800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:145946800-145952400	Weak transcription	Fetal Brain Female	brain
23	chr6:145946800-145955400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:145947000-145955400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:145947000-145955800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:145947200-145955400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:145947400-145948400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:145947400-145952200	Strong transcription	Primary T cells from cord blood	blood
29	chr6:145947400-145955400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:145947600-145948600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr6:145947600-145949800	Weak transcription	Brain Germinal Matrix	brain
32	chr6:145947800-145948600	Strong transcription	Brain Anterior Caudate	brain
33	chr6:145947800-145948800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:145947800-145949200	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:145948000-145948600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:145948000-145948600	Genic enhancers	Adipose Nuclei	Adipose
37	chr6:145948000-145948600	Enhancers	Fetal Heart	heart
38	chr6:145948000-145948800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:145948000-145948800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:145948000-145948800	Strong transcription	Brain Substantia Nigra	brain
41	chr6:145948000-145948800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:145948000-145949000	Strong transcription	Ovary	ovary
43	chr6:145948000-145949000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:145948000-145949200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:145948000-145951200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:145948200-145948400	Genic enhancers	Gastric	stomach
47	chr6:145948200-145948400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr6:145948200-145948800	ZNF genes & repeats	Lung	lung
49	chr6:145948200-145948800	Enhancers	Right Ventricle	heart
50	chr6:145948200-145949000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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