Variant report

Variant	rs73562628
Chromosome Location	chr6:145818732-145818733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145817967..145818790-chr6:145955063..145955734,2	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs12111476	1.00[AMR][1000 genomes]
rs1591698	0.83[AMR][1000 genomes]
rs28479261	1.00[AMR][1000 genomes]
rs28587324	0.83[AMR][1000 genomes]
rs55813779	1.00[AMR][1000 genomes]
rs55814547	1.00[AMR][1000 genomes]
rs55820518	1.00[AMR][1000 genomes]
rs56116838	1.00[AMR][1000 genomes]
rs56198487	1.00[AMR][1000 genomes]
rs56282473	1.00[AMR][1000 genomes]
rs56864636	1.00[AMR][1000 genomes]
rs56950953	1.00[AMR][1000 genomes]
rs57646957	1.00[AMR][1000 genomes]
rs59135568	1.00[AMR][1000 genomes]
rs59557516	1.00[AMR][1000 genomes]
rs61014905	1.00[AMR][1000 genomes]
rs61121433	1.00[AMR][1000 genomes]
rs6570702	0.92[AMR][1000 genomes]
rs6570704	1.00[AMR][1000 genomes]
rs6570707	1.00[AMR][1000 genomes]
rs6570709	1.00[AMR][1000 genomes]
rs6902273	1.00[AMR][1000 genomes]
rs6902952	0.83[AMR][1000 genomes]
rs6904060	1.00[AMR][1000 genomes]
rs6908707	1.00[AMR][1000 genomes]
rs6913497	0.83[AMR][1000 genomes]
rs6914491	0.83[AMR][1000 genomes]
rs6918350	1.00[AMR][1000 genomes]
rs6918739	1.00[AMR][1000 genomes]
rs6919173	1.00[AMR][1000 genomes]
rs6925420	1.00[AMR][1000 genomes]
rs6940415	0.83[AMR][1000 genomes]
rs6940752	1.00[AMR][1000 genomes]
rs6940930	1.00[AMR][1000 genomes]
rs73564486	1.00[AMR][1000 genomes]
rs73566113	0.83[AMR][1000 genomes]
rs73566115	0.83[AMR][1000 genomes]
rs73566121	0.83[AMR][1000 genomes]
rs73566126	0.83[AMR][1000 genomes]
rs73566721	1.00[AMR][1000 genomes]
rs73566724	1.00[AMR][1000 genomes]
rs73566728	1.00[AMR][1000 genomes]
rs73566742	1.00[AMR][1000 genomes]
rs73566747	1.00[AMR][1000 genomes]
rs73566751	1.00[AMR][1000 genomes]
rs73566754	1.00[AMR][1000 genomes]
rs73566757	1.00[AMR][1000 genomes]
rs73568362	1.00[AMR][1000 genomes]
rs73568366	1.00[AMR][1000 genomes]
rs73568375	1.00[AMR][1000 genomes]
rs73568383	1.00[AMR][1000 genomes]
rs73568384	1.00[AMR][1000 genomes]
rs73568389	1.00[AMR][1000 genomes]
rs73568402	1.00[AMR][1000 genomes]
rs73577358	1.00[AMR][1000 genomes]
rs73577363	1.00[AMR][1000 genomes]
rs73577384	1.00[AMR][1000 genomes]
rs73579444	1.00[AMR][1000 genomes]
rs73579498	0.83[AMR][1000 genomes]
rs73782053	0.83[AMR][1000 genomes]
rs73784038	1.00[AMR][1000 genomes]
rs73784067	1.00[AMR][1000 genomes]
rs7738406	1.00[AMR][1000 genomes]
rs7738822	1.00[AMR][1000 genomes]
rs7738906	1.00[AMR][1000 genomes]
rs7744082	0.83[AMR][1000 genomes]
rs7745722	0.83[AMR][1000 genomes]
rs7749377	1.00[AMR][1000 genomes]
rs7750382	1.00[AMR][1000 genomes]
rs7751866	1.00[AMR][1000 genomes]
rs7753694	1.00[AMR][1000 genomes]
rs7757137	1.00[AMR][1000 genomes]
rs7758839	0.83[AMR][1000 genomes]
rs7759254	1.00[AMR][1000 genomes]
rs7768195	1.00[AMR][1000 genomes]
rs7771653	1.00[AMR][1000 genomes]
rs7772012	1.00[AMR][1000 genomes]
rs7772550	1.00[AMR][1000 genomes]
rs7773780	0.91[AMR][1000 genomes]
rs9766595	1.00[AMR][1000 genomes]
rs9766596	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886746	chr6:145815949-145920894	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886747	chr6:145815949-145922777	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2061715	chr6:145818475-145818950	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3389222	chr6:145818533-145818873	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3494546	chr6:145818545-145818879	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3494544	chr6:145818567-145818806	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3473536	chr6:145818570-145818820	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3473538	chr6:145818576-145818837	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3494543	chr6:145818604-145818810	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2876	chr6:145818618-145818931	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3324862	chr6:145818624-145818780	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3473537	chr6:145818649-145818765	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv2602784	chr6:145818660-145818757	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3494545	chr6:145818661-145818760	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1333447	chr6:145818662-145818760	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3473539	chr6:145818663-145818761	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3494547	chr6:145818663-145818761	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145818400-145819000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links