Variant report

Variant	rs55820518
Chromosome Location	chr6:145890777-145890778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs12111090	0.89[AFR][1000 genomes]
rs12111476	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591698	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28479261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587324	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28829296	0.87[AFR][1000 genomes]
rs55658016	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55746945	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55813779	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55814547	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56116838	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198487	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282473	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56864636	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56950953	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57105639	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57646957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58588227	0.82[AFR][1000 genomes]
rs59135568	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59557516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60162832	0.83[AMR][1000 genomes]
rs60609437	0.83[AMR][1000 genomes]
rs61014905	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61041405	0.89[AFR][1000 genomes]
rs61121433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570702	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6570704	1.00[AMR][1000 genomes]
rs6570707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570709	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570710	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570714	0.83[AMR][1000 genomes]
rs6570720	0.83[AMR][1000 genomes]
rs6900158	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6901219	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6901587	0.83[AMR][1000 genomes]
rs6902273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902358	0.83[AMR][1000 genomes]
rs6902952	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6904060	1.00[AMR][1000 genomes]
rs6908707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913497	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6914491	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6918350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919173	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920248	0.83[AFR][1000 genomes]
rs6921110	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6925420	1.00[AMR][1000 genomes]
rs6927960	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6928780	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6930335	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6931280	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940415	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940752	1.00[AMR][1000 genomes]
rs6940930	1.00[AMR][1000 genomes]
rs73562628	1.00[AMR][1000 genomes]
rs73564486	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566113	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566115	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566121	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566126	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566139	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566140	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566157	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566168	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566721	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566724	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566728	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566742	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566757	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568127	0.82[AFR][1000 genomes]
rs73568130	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568133	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568134	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568138	0.82[AFR][1000 genomes]
rs73568145	0.83[AMR][1000 genomes]
rs73568148	0.83[AMR][1000 genomes]
rs73568151	0.83[AMR][1000 genomes]
rs73568185	0.83[AMR][1000 genomes]
rs73568188	0.83[AMR][1000 genomes]
rs73568362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568375	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568383	1.00[AMR][1000 genomes]
rs73568384	1.00[AMR][1000 genomes]
rs73568389	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568402	1.00[AMR][1000 genomes]
rs73577358	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577363	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577384	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579444	1.00[AMR][1000 genomes]
rs73579478	0.88[AFR][1000 genomes]
rs73579483	0.90[AFR][1000 genomes]
rs73579498	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782053	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782068	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73784038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784067	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738406	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738822	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738906	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741139	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7744082	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745379	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745722	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7749377	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7751866	1.00[AMR][1000 genomes]
rs7753694	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753832	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7754367	0.83[AFR][1000 genomes]
rs7757137	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758839	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7759254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761251	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7761577	0.83[AMR][1000 genomes]
rs7763273	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7768195	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771653	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772012	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772550	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773780	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9766595	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9766596	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886746	chr6:145815949-145920894	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886747	chr6:145815949-145922777	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1028290	chr6:145819982-145911857	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886748	chr6:145835917-145911730	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145889600-145890800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:145890000-145890800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:145890600-145904600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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