Variant report

Variant	rs6920248
Chromosome Location	chr6:146049012-146049013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:146047690..146050384-chr6:146050492..146052811,2	K562	blood:
2	chr6:146043150..146050221-chr6:146053202..146058792,11	MCF-7	breast:
3	chr6:146040316..146042577-chr6:146048417..146050382,3	K562	blood:
4	chr6:146043919..146045619-chr6:146047459..146050321,2	K562	blood:
5	chr6:146040935..146043789-chr6:146048451..146050573,2	K562	blood:
6	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:
7	chr6:146047111..146049534-chr6:146133059..146136238,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270828	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs12111090	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs12111476	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1591698	0.96[AFR][1000 genomes]
rs17223456	1.00[ASN][1000 genomes]
rs17821586	1.00[ASN][1000 genomes]
rs17821684	1.00[ASN][1000 genomes]
rs17821702	1.00[ASN][1000 genomes]
rs17822170	1.00[ASN][1000 genomes]
rs1856245	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935614	1.00[ASN][1000 genomes]
rs1988640	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2068029	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479261	0.86[AFR][1000 genomes]
rs28568954	1.00[ASN][1000 genomes]
rs28587324	0.96[AFR][1000 genomes]
rs28829296	0.96[AFR][1000 genomes]
rs3891273	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4343934	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895677	1.00[ASN][1000 genomes]
rs4895680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895681	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895685	1.00[ASN][1000 genomes]
rs4895686	1.00[ASN][1000 genomes]
rs4896819	1.00[ASN][1000 genomes]
rs4896823	1.00[ASN][1000 genomes]
rs4896825	1.00[ASN][1000 genomes]
rs4896830	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4896834	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896845	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896846	1.00[ASN][1000 genomes]
rs4896847	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896849	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55658016	0.96[AFR][1000 genomes]
rs55746945	0.96[AFR][1000 genomes]
rs55813779	0.88[AFR][1000 genomes]
rs55814547	0.88[AFR][1000 genomes]
rs55820518	0.83[AFR][1000 genomes]
rs56116838	0.89[AFR][1000 genomes]
rs56198487	0.82[AFR][1000 genomes]
rs56241331	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56282473	0.88[AFR][1000 genomes]
rs56864636	0.83[AFR][1000 genomes]
rs56950953	0.88[AFR][1000 genomes]
rs57105639	0.96[AFR][1000 genomes]
rs57646957	0.86[AFR][1000 genomes]
rs58588227	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58658594	0.84[AMR][1000 genomes]
rs59135568	0.89[AFR][1000 genomes]
rs59557516	0.86[AFR][1000 genomes]
rs60043524	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60162832	0.92[AFR][1000 genomes]
rs60609437	0.92[AFR][1000 genomes]
rs60875801	0.86[AFR][1000 genomes]
rs61014905	0.86[AFR][1000 genomes]
rs61041405	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61121433	0.89[AFR][1000 genomes]
rs61358848	0.84[AMR][1000 genomes]
rs61638226	0.84[AMR][1000 genomes]
rs6570702	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6570704	0.95[YRI][hapmap]
rs6570707	0.89[AFR][1000 genomes]
rs6570709	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6570710	0.96[AFR][1000 genomes]
rs6570714	0.93[AFR][1000 genomes]
rs6570720	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs6570721	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs6570722	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6900158	0.99[AFR][1000 genomes]
rs6901219	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs6901587	0.92[AFR][1000 genomes]
rs6902273	0.89[AFR][1000 genomes]
rs6902358	0.92[AFR][1000 genomes]
rs6902952	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6904060	0.90[YRI][hapmap]
rs6908707	0.88[AFR][1000 genomes]
rs6913497	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6914491	0.89[YRI][hapmap];0.95[AFR][1000 genomes]
rs6914746	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6918350	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6918739	0.86[AFR][1000 genomes]
rs6919173	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6921110	0.99[AFR][1000 genomes]
rs6921551	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6927960	0.88[YRI][hapmap];0.96[AFR][1000 genomes]
rs6928780	0.90[YRI][hapmap];0.96[AFR][1000 genomes]
rs6930335	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6931280	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6938028	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6940415	0.92[AFR][1000 genomes]
rs6940930	0.95[YRI][hapmap]
rs7341315	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs734166	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs73564486	0.86[AFR][1000 genomes]
rs73566113	0.93[AFR][1000 genomes]
rs73566115	0.96[AFR][1000 genomes]
rs73566121	0.96[AFR][1000 genomes]
rs73566126	0.96[AFR][1000 genomes]
rs73566139	0.99[AFR][1000 genomes]
rs73566140	0.99[AFR][1000 genomes]
rs73566157	0.98[AFR][1000 genomes]
rs73566168	0.98[AFR][1000 genomes]
rs73566721	0.84[AFR][1000 genomes]
rs73566724	0.86[AFR][1000 genomes]
rs73566728	0.86[AFR][1000 genomes]
rs73566742	0.86[AFR][1000 genomes]
rs73566747	0.86[AFR][1000 genomes]
rs73566751	0.86[AFR][1000 genomes]
rs73566754	0.86[AFR][1000 genomes]
rs73566757	0.85[AFR][1000 genomes]
rs73568127	0.99[AFR][1000 genomes]
rs73568130	0.98[AFR][1000 genomes]
rs73568133	0.98[AFR][1000 genomes]
rs73568134	0.98[AFR][1000 genomes]
rs73568138	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73568145	0.93[AFR][1000 genomes]
rs73568148	0.93[AFR][1000 genomes]
rs73568151	0.93[AFR][1000 genomes]
rs73568185	0.89[AFR][1000 genomes]
rs73568188	0.90[AFR][1000 genomes]
rs73568362	0.88[AFR][1000 genomes]
rs73568366	0.88[AFR][1000 genomes]
rs73568375	0.88[AFR][1000 genomes]
rs73568389	0.82[AFR][1000 genomes]
rs73570014	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73577358	0.89[AFR][1000 genomes]
rs73577363	0.89[AFR][1000 genomes]
rs73577384	0.89[AFR][1000 genomes]
rs73579478	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73579483	0.90[AFR][1000 genomes]
rs73579498	0.92[AFR][1000 genomes]
rs73782053	0.92[AFR][1000 genomes]
rs73782068	0.98[AFR][1000 genomes]
rs73784038	0.86[AFR][1000 genomes]
rs73784067	0.88[AFR][1000 genomes]
rs7738406	0.88[AFR][1000 genomes]
rs7738822	0.88[AFR][1000 genomes]
rs7738906	0.88[AFR][1000 genomes]
rs7741139	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs7744082	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7745379	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs7745722	0.90[AFR][1000 genomes]
rs7750382	0.86[AFR][1000 genomes]
rs7753694	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7753832	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs7754367	0.98[AFR][1000 genomes]
rs7757137	0.83[AFR][1000 genomes]
rs7758839	0.92[AFR][1000 genomes]
rs7759254	0.84[AFR][1000 genomes]
rs7761251	0.98[AFR][1000 genomes]
rs7761577	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7763273	0.99[AFR][1000 genomes]
rs7768195	0.88[AFR][1000 genomes]
rs7771112	0.89[AFR][1000 genomes]
rs7771653	0.86[AFR][1000 genomes]
rs7772012	0.89[AFR][1000 genomes]
rs7772550	0.88[AFR][1000 genomes]
rs7773780	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs9485005	1.00[ASN][1000 genomes]
rs9497352	1.00[ASN][1000 genomes]
rs9497355	1.00[ASN][1000 genomes]
rs9497366	1.00[ASN][1000 genomes]
rs9497368	1.00[ASN][1000 genomes]
rs9766595	0.87[AFR][1000 genomes]
rs9766596	0.88[AFR][1000 genomes]
rs9767028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999859	1.00[CEU][hapmap]
rs999860	1.00[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424432	chr6:146041308-146057603	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:146026800-146055800	Weak transcription	Left Ventricle	heart
3	chr6:146028600-146049200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:146030200-146054000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:146035800-146055200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:146036200-146049800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:146036200-146054800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:146036800-146050000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:146036800-146050000	Weak transcription	Thymus	Thymus
10	chr6:146037000-146052000	Weak transcription	Ovary	ovary
11	chr6:146038400-146052600	Weak transcription	Fetal Heart	heart
12	chr6:146041800-146050000	Weak transcription	Fetal Stomach	stomach
13	chr6:146045000-146055200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:146045600-146054800	Weak transcription	Primary T cells from cord blood	blood
15	chr6:146046200-146050000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:146047000-146049800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:146047800-146055000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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