Variant report

Variant	rs9497368
Chromosome Location	chr6:145926163-145926164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs17223456	1.00[ASN][1000 genomes]
rs17821586	1.00[ASN][1000 genomes]
rs17821684	1.00[ASN][1000 genomes]
rs17821702	1.00[ASN][1000 genomes]
rs17822170	1.00[ASN][1000 genomes]
rs1856245	1.00[ASN][1000 genomes]
rs1935614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1988640	1.00[ASN][1000 genomes]
rs2068029	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28568954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3891273	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4343934	1.00[ASN][1000 genomes]
rs4895676	1.00[EUR][1000 genomes]
rs4895677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895680	1.00[ASN][1000 genomes]
rs4895681	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4895685	1.00[ASN][1000 genomes]
rs4895686	1.00[ASN][1000 genomes]
rs4896819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896830	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4896834	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4896845	1.00[ASN][1000 genomes]
rs4896846	1.00[ASN][1000 genomes]
rs4896847	1.00[ASN][1000 genomes]
rs4896849	1.00[ASN][1000 genomes]
rs56241331	1.00[ASN][1000 genomes]
rs58588227	1.00[ASN][1000 genomes]
rs58658594	1.00[EUR][1000 genomes]
rs60043524	1.00[ASN][1000 genomes]
rs61041405	1.00[ASN][1000 genomes]
rs61358848	1.00[EUR][1000 genomes]
rs61638226	1.00[EUR][1000 genomes]
rs6570721	1.00[CEU][hapmap]
rs6570722	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6914746	1.00[ASN][1000 genomes]
rs6920248	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6921551	1.00[ASN][1000 genomes]
rs6938028	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs734166	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs73568138	1.00[ASN][1000 genomes]
rs73570014	1.00[ASN][1000 genomes]
rs73579478	1.00[ASN][1000 genomes]
rs9485005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485012	0.97[AFR][1000 genomes]
rs9497352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497376	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9497382	0.95[AFR][1000 genomes]
rs9497407	1.00[YRI][hapmap]
rs9767028	1.00[ASN][1000 genomes]
rs999859	1.00[CEU][hapmap]
rs999860	1.00[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970064	chr6:145921494-145933513	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9497368	FAM118A	trans	lymphoblastoid	seeQTL
rs9497368	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145924400-145948200	Weak transcription	Left Ventricle	heart
2	chr6:145926000-145926200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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