Variant report

Variant	rs28568954
Chromosome Location	chr6:145901013-145901014
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs17223456	1.00[ASN][1000 genomes]
rs17821586	1.00[ASN][1000 genomes]
rs17821684	1.00[ASN][1000 genomes]
rs17821702	1.00[ASN][1000 genomes]
rs17822170	1.00[ASN][1000 genomes]
rs1856245	1.00[ASN][1000 genomes]
rs1935614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068029	1.00[ASN][1000 genomes]
rs3891273	1.00[ASN][1000 genomes]
rs4343934	1.00[ASN][1000 genomes]
rs4895676	1.00[EUR][1000 genomes]
rs4895677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895680	1.00[ASN][1000 genomes]
rs4895681	1.00[ASN][1000 genomes]
rs4895685	1.00[ASN][1000 genomes]
rs4895686	1.00[ASN][1000 genomes]
rs4896819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896830	1.00[ASN][1000 genomes]
rs4896834	1.00[ASN][1000 genomes]
rs4896845	1.00[ASN][1000 genomes]
rs4896846	1.00[ASN][1000 genomes]
rs4896847	1.00[ASN][1000 genomes]
rs4896849	1.00[ASN][1000 genomes]
rs56241331	1.00[ASN][1000 genomes]
rs58588227	1.00[ASN][1000 genomes]
rs58658594	1.00[EUR][1000 genomes]
rs60043524	1.00[ASN][1000 genomes]
rs61041405	1.00[ASN][1000 genomes]
rs61358848	1.00[EUR][1000 genomes]
rs61638226	1.00[EUR][1000 genomes]
rs6570722	1.00[ASN][1000 genomes]
rs6914746	1.00[ASN][1000 genomes]
rs6920248	1.00[ASN][1000 genomes]
rs6938028	1.00[ASN][1000 genomes]
rs734166	1.00[ASN][1000 genomes]
rs73568138	1.00[ASN][1000 genomes]
rs73570014	1.00[ASN][1000 genomes]
rs73579478	1.00[ASN][1000 genomes]
rs9485005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485012	0.97[AFR][1000 genomes]
rs9497352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497376	0.95[AFR][1000 genomes]
rs9497382	0.95[AFR][1000 genomes]
rs9767028	1.00[ASN][1000 genomes]
rs999860	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886746	chr6:145815949-145920894	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886747	chr6:145815949-145922777	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1028290	chr6:145819982-145911857	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886748	chr6:145835917-145911730	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145890600-145904600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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