Variant report

Variant	rs4895676
Chromosome Location	chr6:145851945-145851946
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1848569	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1935614	1.00[EUR][1000 genomes]
rs2068029	1.00[CEU][hapmap]
rs28568954	1.00[EUR][1000 genomes]
rs3891273	1.00[CEU][hapmap]
rs4895677	1.00[EUR][1000 genomes]
rs4895681	1.00[CEU][hapmap]
rs4896810	0.88[ASN][1000 genomes]
rs4896815	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4896817	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896819	1.00[EUR][1000 genomes]
rs4896823	1.00[EUR][1000 genomes]
rs4896825	1.00[EUR][1000 genomes]
rs4896830	1.00[CEU][hapmap]
rs4896834	1.00[CEU][hapmap]
rs58658594	1.00[EUR][1000 genomes]
rs61358848	1.00[EUR][1000 genomes]
rs61638226	1.00[EUR][1000 genomes]
rs6920248	1.00[CEU][hapmap]
rs9485005	1.00[EUR][1000 genomes]
rs9497352	1.00[EUR][1000 genomes]
rs9497355	1.00[EUR][1000 genomes]
rs9497366	0.88[EUR][1000 genomes]
rs9497368	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886746	chr6:145815949-145920894	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886747	chr6:145815949-145922777	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1028290	chr6:145819982-145911857	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886748	chr6:145835917-145911730	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1021041	chr6:145836942-145887333	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1016881	chr6:145840961-145887333	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538465	chr6:145840961-145887333	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145850000-145852600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr6:145850400-145853200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:145850400-145854200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:145850600-145852000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:145850600-145852600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:145850800-145852200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:145850800-145854600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:145851000-145852400	Enhancers	Stomach Mucosa	stomach
9	chr6:145851000-145853200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr6:145851200-145853000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:145851400-145852400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr6:145851400-145853600	Weak transcription	Left Ventricle	heart
13	chr6:145851600-145852600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr6:145851600-145852600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:145851600-145853600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:145851800-145853200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr6:145851800-145856000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links