Variant report

Variant	rs2068029
Chromosome Location	chr6:146000991-146000992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17223456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17821586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17821684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17821702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17822170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1856245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935614	1.00[ASN][1000 genomes]
rs1988640	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28568954	1.00[ASN][1000 genomes]
rs3891273	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4343934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895677	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895681	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895685	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896819	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896823	1.00[ASN][1000 genomes]
rs4896825	1.00[ASN][1000 genomes]
rs4896830	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896834	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896845	1.00[ASN][1000 genomes]
rs4896846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896847	1.00[ASN][1000 genomes]
rs4896849	1.00[ASN][1000 genomes]
rs56241331	1.00[ASN][1000 genomes]
rs58588227	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60043524	1.00[ASN][1000 genomes]
rs61041405	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570721	1.00[CEU][hapmap]
rs6570722	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6914746	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6920248	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921551	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6938028	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7341315	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs734166	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73568138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73570014	1.00[ASN][1000 genomes]
rs73579478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485005	1.00[ASN][1000 genomes]
rs9497352	1.00[ASN][1000 genomes]
rs9497355	1.00[ASN][1000 genomes]
rs9497366	1.00[ASN][1000 genomes]
rs9497368	1.00[ASN][1000 genomes]
rs9767028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999859	1.00[CEU][hapmap]
rs999860	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3407277	chr6:145998059-146002457	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
2	esv3323445	chr6:145999759-146003957	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
2	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:145974200-146002800	Weak transcription	Liver	Liver
4	chr6:145974800-146003600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:145980600-146010800	Weak transcription	Right Ventricle	heart
6	chr6:145982800-146003000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:145984400-146003000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:145986600-146006400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:145987600-146003000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:145988200-146002800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:145988400-146003000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:145988400-146003000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:145988600-146002800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:145988600-146003000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:145988600-146003000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:145989800-146003000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:145990200-146003000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:145990600-146004400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:145990800-146002800	Weak transcription	Brain Anterior Caudate	brain
20	chr6:145991000-146003200	Weak transcription	Fetal Thymus	thymus
21	chr6:145991200-146002800	Weak transcription	Ovary	ovary
22	chr6:145991200-146003000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:145991200-146008800	Weak transcription	Brain Angular Gyrus	brain
24	chr6:145991600-146002800	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:145991800-146002800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:145991800-146009200	Weak transcription	NHDF-Ad	bronchial
27	chr6:145992400-146003000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:145994200-146002800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:145994600-146007000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:145994800-146002800	Weak transcription	Primary B cells from cord blood	blood
31	chr6:145994800-146008400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:145995000-146010800	Weak transcription	Left Ventricle	heart
33	chr6:145995200-146003000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:145995200-146004000	Weak transcription	Fetal Stomach	stomach
35	chr6:145995200-146006400	Weak transcription	Lung	lung
36	chr6:145995200-146013200	Weak transcription	Pancreas	Pancrea
37	chr6:145995400-146003200	Weak transcription	Aorta	Aorta
38	chr6:145998000-146003200	Weak transcription	Fetal Brain Male	brain
39	chr6:145998800-146010800	Weak transcription	HSMMtube	muscle
40	chr6:145999000-146001200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:145999000-146010800	Weak transcription	Psoas Muscle	Psoas
42	chr6:145999400-146003000	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:145999600-146002800	Weak transcription	Brain Hippocampus Middle	brain
44	chr6:145999600-146008600	Weak transcription	Fetal Intestine Large	intestine
45	chr6:146000000-146002800	Weak transcription	Brain Germinal Matrix	brain
46	chr6:146000000-146002800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:146000400-146001200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:146000600-146003400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:146000600-146010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:146000800-146001000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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