Variant report

Variant	rs17821702
Chromosome Location	chr6:146118055-146118056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146078233..146080576-chr6:146117352..146119241,2	K562	blood:
2	chr6:146116668..146118837-chr6:146129546..146132090,2	MCF-7	breast:
3	chr6:146117599..146120240-chr6:146121870..146124861,2	MCF-7	breast:
4	chr6:146115930..146118783-chr6:146133946..146136600,2	MCF-7	breast:
5	chr6:146056101..146058429-chr6:146117855..146120518,3	K562	blood:

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs17223456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1935614	1.00[ASN][1000 genomes]
rs1988640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28568954	1.00[ASN][1000 genomes]
rs3891273	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4343934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895685	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896823	1.00[ASN][1000 genomes]
rs4896825	1.00[ASN][1000 genomes]
rs4896830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896849	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58588227	1.00[ASN][1000 genomes]
rs60043524	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61041405	1.00[ASN][1000 genomes]
rs6570721	0.89[EUR][1000 genomes]
rs6570722	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914746	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920248	1.00[ASN][1000 genomes]
rs6921551	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938028	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341315	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73568138	1.00[ASN][1000 genomes]
rs73570014	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73579478	1.00[ASN][1000 genomes]
rs9485005	1.00[ASN][1000 genomes]
rs9497352	1.00[ASN][1000 genomes]
rs9497355	1.00[ASN][1000 genomes]
rs9497366	1.00[ASN][1000 genomes]
rs9497368	1.00[ASN][1000 genomes]
rs9767028	1.00[ASN][1000 genomes]
rs999860	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146100600-146123200	Weak transcription	HUVEC	blood vessel
2	chr6:146103000-146119400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:146104600-146118800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:146105000-146123200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
7	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:146105600-146119000	Weak transcription	NH-A	brain
9	chr6:146105800-146125600	Weak transcription	Fetal Kidney	kidney
10	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:146106600-146118400	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:146106600-146122200	Weak transcription	NHLF	lung
13	chr6:146106800-146121200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:146106800-146122800	Weak transcription	HSMMtube	muscle
15	chr6:146107000-146122200	Weak transcription	Left Ventricle	heart
16	chr6:146107000-146125600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:146109400-146120200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
19	chr6:146111000-146120200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:146112400-146118400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:146112400-146122200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:146112400-146122400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:146112400-146122400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:146112400-146122400	Weak transcription	Adipose Nuclei	Adipose
25	chr6:146112400-146123000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:146112400-146125400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:146112400-146125400	Weak transcription	Fetal Stomach	stomach
28	chr6:146112400-146125600	Weak transcription	Aorta	Aorta
29	chr6:146112400-146125600	Weak transcription	Brain Substantia Nigra	brain
30	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:146112600-146118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:146112600-146121200	Weak transcription	Osteobl	bone
33	chr6:146112600-146122200	Weak transcription	Primary B cells from cord blood	blood
34	chr6:146112600-146124600	Weak transcription	Liver	Liver
35	chr6:146112600-146125800	Weak transcription	Fetal Brain Female	brain
36	chr6:146112800-146122000	Weak transcription	NHEK	skin
37	chr6:146113000-146123200	Weak transcription	HMEC	breast
38	chr6:146113200-146122200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:146113200-146122800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:146113400-146118800	Weak transcription	Ovary	ovary
41	chr6:146113400-146122800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:146113600-146122200	Weak transcription	Psoas Muscle	Psoas
44	chr6:146113600-146122800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:146113800-146118400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:146113800-146119800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:146113800-146124000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:146113800-146126000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:146114200-146119200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:146114200-146122200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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