Variant report

Variant	rs4896847
Chromosome Location	chr6:146083073-146083074
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146077264..146080093-chr6:146082462..146084742,2	K562	blood:
2	chr6:146082657..146084474-chr6:146130198..146131949,2	K562	blood:
3	chr6:146082619..146083392-chr6:146226555..146227506,3	MCF-7	breast:
4	chr6:146081993..146084168-chr6:146132441..146134166,2	MCF-7	breast:
5	chr6:146082683..146083401-chr6:146208884..146209504,2	MCF-7	breast:
6	chr6:146077433..146080093-chr6:146081653..146083962,2	K562	blood:

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs12111090	0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs12111476	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1591698	0.89[AFR][1000 genomes]
rs17223456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822170	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856245	1.00[ASN][1000 genomes]
rs1935614	1.00[ASN][1000 genomes]
rs1988640	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068029	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28568954	1.00[ASN][1000 genomes]
rs28587324	0.89[AFR][1000 genomes]
rs28829296	0.89[AFR][1000 genomes]
rs3891273	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4343934	1.00[ASN][1000 genomes]
rs4895680	1.00[ASN][1000 genomes]
rs4895681	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4895685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896823	1.00[ASN][1000 genomes]
rs4896825	1.00[ASN][1000 genomes]
rs4896830	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4896834	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4896845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896849	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55658016	0.89[AFR][1000 genomes]
rs55746945	0.89[AFR][1000 genomes]
rs55813779	0.81[AFR][1000 genomes]
rs55814547	0.81[AFR][1000 genomes]
rs56116838	0.82[AFR][1000 genomes]
rs56241331	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56282473	0.81[AFR][1000 genomes]
rs56950953	0.81[AFR][1000 genomes]
rs57105639	0.89[AFR][1000 genomes]
rs58588227	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58658594	0.84[AMR][1000 genomes]
rs59135568	0.82[AFR][1000 genomes]
rs60043524	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60162832	0.99[AFR][1000 genomes]
rs60609437	0.99[AFR][1000 genomes]
rs61041405	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61121433	0.82[AFR][1000 genomes]
rs61358848	0.84[AMR][1000 genomes]
rs61638226	0.84[AMR][1000 genomes]
rs6570702	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6570704	0.90[YRI][hapmap]
rs6570707	0.82[AFR][1000 genomes]
rs6570709	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs6570710	0.89[AFR][1000 genomes]
rs6570714	0.98[AFR][1000 genomes]
rs6570720	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs6570721	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6570722	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900158	0.92[AFR][1000 genomes]
rs6901219	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs6901587	0.99[AFR][1000 genomes]
rs6902273	0.82[AFR][1000 genomes]
rs6902358	0.99[AFR][1000 genomes]
rs6902952	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs6904060	0.89[YRI][hapmap]
rs6908707	0.81[AFR][1000 genomes]
rs6913497	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs6914491	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs6914746	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918350	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs6919173	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6920248	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6921110	0.92[AFR][1000 genomes]
rs6921551	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927960	0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs6928780	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs6930335	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6931280	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs6938028	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940415	0.85[AFR][1000 genomes]
rs6940930	0.90[YRI][hapmap]
rs7341315	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734166	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73566113	0.86[AFR][1000 genomes]
rs73566115	0.89[AFR][1000 genomes]
rs73566121	0.89[AFR][1000 genomes]
rs73566126	0.89[AFR][1000 genomes]
rs73566139	0.92[AFR][1000 genomes]
rs73566140	0.92[AFR][1000 genomes]
rs73566157	0.93[AFR][1000 genomes]
rs73566168	0.93[AFR][1000 genomes]
rs73568127	0.94[AFR][1000 genomes]
rs73568130	0.93[AFR][1000 genomes]
rs73568133	0.93[AFR][1000 genomes]
rs73568134	0.93[AFR][1000 genomes]
rs73568138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73568145	0.98[AFR][1000 genomes]
rs73568148	0.98[AFR][1000 genomes]
rs73568151	0.98[AFR][1000 genomes]
rs73568185	0.96[AFR][1000 genomes]
rs73568188	0.98[AFR][1000 genomes]
rs73568362	0.81[AFR][1000 genomes]
rs73568366	0.81[AFR][1000 genomes]
rs73568375	0.81[AFR][1000 genomes]
rs73570014	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577358	0.82[AFR][1000 genomes]
rs73577363	0.82[AFR][1000 genomes]
rs73577384	0.82[AFR][1000 genomes]
rs73579478	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73579483	0.84[AFR][1000 genomes]
rs73579498	0.85[AFR][1000 genomes]
rs73782053	0.85[AFR][1000 genomes]
rs73782068	0.93[AFR][1000 genomes]
rs73784067	0.81[AFR][1000 genomes]
rs7738406	0.81[AFR][1000 genomes]
rs7738822	0.81[AFR][1000 genomes]
rs7738906	0.81[AFR][1000 genomes]
rs7741139	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7744082	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs7745379	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7745722	0.84[AFR][1000 genomes]
rs7753694	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7753832	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7754367	0.93[AFR][1000 genomes]
rs7758839	0.85[AFR][1000 genomes]
rs7761251	0.93[AFR][1000 genomes]
rs7761577	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs7763273	0.92[AFR][1000 genomes]
rs7768195	0.81[AFR][1000 genomes]
rs7771112	0.85[AFR][1000 genomes]
rs7772012	0.82[AFR][1000 genomes]
rs7772550	0.81[AFR][1000 genomes]
rs7773780	0.88[YRI][hapmap];0.80[AFR][1000 genomes]
rs9485005	1.00[ASN][1000 genomes]
rs9497352	1.00[ASN][1000 genomes]
rs9497355	1.00[ASN][1000 genomes]
rs9497366	1.00[ASN][1000 genomes]
rs9497368	1.00[ASN][1000 genomes]
rs9766595	0.80[AFR][1000 genomes]
rs9766596	0.81[AFR][1000 genomes]
rs9767028	1.00[ASN][1000 genomes]
rs999859	1.00[CEU][hapmap]
rs999860	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146080000-146084200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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