Variant report

Variant	rs734166
Chromosome Location	chr6:146110806-146110807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146109509..146111259-chr6:146124706..146127003,2	K562	blood:
2	chr6:146091446..146094349-chr6:146109595..146112049,2	K562	blood:
3	chr6:146054610..146058060-chr6:146107299..146111680,4	K562	blood:

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17223456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1935614	1.00[ASN][1000 genomes]
rs1988640	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068029	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28568954	1.00[ASN][1000 genomes]
rs3891273	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4343934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895681	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895685	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896823	1.00[ASN][1000 genomes]
rs4896825	1.00[ASN][1000 genomes]
rs4896830	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896834	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896849	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58588227	1.00[ASN][1000 genomes]
rs60043524	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61041405	1.00[ASN][1000 genomes]
rs6570721	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6570722	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914746	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920248	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6921551	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938028	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341315	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73568138	1.00[ASN][1000 genomes]
rs73570014	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73579478	1.00[ASN][1000 genomes]
rs9485005	1.00[ASN][1000 genomes]
rs9497352	1.00[ASN][1000 genomes]
rs9497355	1.00[ASN][1000 genomes]
rs9497366	1.00[ASN][1000 genomes]
rs9497368	1.00[ASN][1000 genomes]
rs9767028	1.00[ASN][1000 genomes]
rs999859	1.00[CEU][hapmap]
rs999860	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146100600-146123200	Weak transcription	HUVEC	blood vessel
2	chr6:146101000-146112200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:146101800-146114000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:146103000-146119400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:146104400-146111200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:146104600-146118800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:146104800-146111400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:146104800-146112400	Weak transcription	Right Atrium	heart
10	chr6:146105000-146123200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
12	chr6:146105400-146112000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:146105600-146119000	Weak transcription	NH-A	brain
15	chr6:146105800-146125600	Weak transcription	Fetal Kidney	kidney
16	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:146106200-146111400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:146106200-146113800	Weak transcription	Dnd41	blood
19	chr6:146106600-146111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:146106600-146118400	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:146106600-146122200	Weak transcription	NHLF	lung
22	chr6:146106800-146121200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:146106800-146122800	Weak transcription	HSMMtube	muscle
24	chr6:146107000-146111400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:146107000-146111800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:146107000-146111800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:146107000-146113200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:146107000-146122200	Weak transcription	Left Ventricle	heart
29	chr6:146107000-146125600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:146107400-146111200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:146109000-146112200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:146109000-146112600	ZNF genes & repeats	Fetal Brain Female	brain
33	chr6:146109400-146111000	Genic enhancers	K562	blood
34	chr6:146109400-146120200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:146109600-146111400	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:146109800-146112400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:146110000-146111600	Weak transcription	HSMM	muscle
38	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
39	chr6:146110400-146111000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:146110600-146111000	Enhancers	Fetal Heart	heart
41	chr6:146110600-146112000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:146110600-146113400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:146110800-146111200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr6:146110800-146111600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:146110800-146111800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:146110800-146113000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:146110800-146114400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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