Variant report

Variant	rs6914746
Chromosome Location	chr6:146127029-146127030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:146125227..146127390-chr6:147195010..147197775,2	K562	blood:
2	chr6:146088676..146091245-chr6:146126416..146129256,2	K562	blood:
3	chr6:146125578..146127753-chr6:146287911..146290228,2	K562	blood:
4	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
5	chr6:145965389..145967429-chr6:146126660..146128334,2	K562	blood:
6	chr6:146054833..146059237-chr6:146126389..146132897,8	MCF-7	breast:
7	chr6:146120708..146122690-chr6:146126076..146128209,2	MCF-7	breast:
8	chr6:146054602..146056555-chr6:146125014..146127931,2	MCF-7	breast:
9	chr6:146076265..146078727-chr6:146125828..146127450,2	MCF-7	breast:
10	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270638	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270828	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12111476	0.81[LWK][hapmap]
rs17223456	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821586	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821684	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821702	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822170	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856245	1.00[ASN][1000 genomes]
rs1935614	1.00[ASN][1000 genomes]
rs1988640	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068029	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28568954	1.00[ASN][1000 genomes]
rs3891273	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4343934	1.00[ASN][1000 genomes]
rs4895680	1.00[ASN][1000 genomes]
rs4895681	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4895685	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895686	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896823	1.00[ASN][1000 genomes]
rs4896825	1.00[ASN][1000 genomes]
rs4896830	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4896834	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4896845	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896846	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896847	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896849	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241331	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56954340	0.95[AFR][1000 genomes]
rs57057101	0.95[AFR][1000 genomes]
rs58588227	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60043524	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61041405	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570702	0.81[LWK][hapmap]
rs6570721	1.00[CEU][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570722	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900565	0.92[AFR][1000 genomes]
rs6919173	0.81[LWK][hapmap]
rs6920248	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6921551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930335	0.81[LWK][hapmap]
rs6938028	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938895	0.90[ASW][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6940256	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7341315	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734166	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73568138	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73570006	0.93[AFR][1000 genomes]
rs73570010	0.95[AFR][1000 genomes]
rs73570014	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73570033	0.92[AFR][1000 genomes]
rs73570037	0.92[AFR][1000 genomes]
rs73572161	0.97[AFR][1000 genomes]
rs73579478	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7753694	0.81[LWK][hapmap]
rs7761577	0.83[LWK][hapmap]
rs7773780	0.81[LWK][hapmap]
rs9497355	1.00[ASN][1000 genomes]
rs9497366	1.00[ASN][1000 genomes]
rs9497368	1.00[ASN][1000 genomes]
rs9767028	1.00[ASN][1000 genomes]
rs999859	1.00[CEU][hapmap]
rs999860	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv981375	chr6:146125997-146130212	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
2	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:146110200-146135000	Weak transcription	Pancreas	Pancrea
4	chr6:146112400-146135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:146113400-146133600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:146116800-146128600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:146117400-146130400	Strong transcription	HSMM	muscle
8	chr6:146118400-146128600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:146119200-146134800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:146119400-146127600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:146119400-146135000	Weak transcription	Small Intestine	intestine
12	chr6:146119600-146127400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:146120200-146127600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:146120200-146127600	Strong transcription	Dnd41	blood
15	chr6:146120200-146128600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:146120200-146129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:146120600-146128600	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:146121200-146127600	Strong transcription	Osteobl	bone
19	chr6:146121200-146134600	Weak transcription	Colonic Mucosa	Colon
20	chr6:146121200-146134600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:146121400-146130400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:146121400-146135000	Weak transcription	Gastric	stomach
23	chr6:146121600-146127800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:146122200-146127400	Strong transcription	NHLF	lung
25	chr6:146122200-146127600	Strong transcription	Primary B cells from cord blood	blood
26	chr6:146122200-146127600	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:146122200-146127600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:146122200-146127600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr6:146122200-146127600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:146122200-146127600	Strong transcription	HepG2	liver
31	chr6:146122200-146127800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:146122200-146128000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:146122200-146128600	Strong transcription	A549	lung
34	chr6:146122200-146129200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:146122200-146134000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr6:146122400-146127400	Strong transcription	Adipose Nuclei	Adipose
37	chr6:146122400-146127400	Strong transcription	Fetal Muscle Leg	muscle
38	chr6:146122400-146127600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr6:146122400-146127600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:146122400-146127600	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr6:146122400-146128600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:146122400-146130400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:146122600-146127600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr6:146122800-146127200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:146122800-146127400	Strong transcription	HSMMtube	muscle
46	chr6:146122800-146127600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr6:146122800-146127600	Strong transcription	Placenta	Placenta
48	chr6:146122800-146127800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:146123000-146127400	Strong transcription	Colon Smooth Muscle	Colon
50	chr6:146123000-146127400	Strong transcription	Left Ventricle	heart

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