Variant report

Variant	rs73568138
Chromosome Location	chr6:146068361-146068362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146067270..146069844-chr6:146198797..146201011,2	K562	blood:
2	chr6:146054362..146061512-chr6:146062972..146071024,19	K562	blood:
3	chr6:146063634..146066824-chr6:146068025..146070390,4	K562	blood:
4	chr6:146055188..146058502-chr6:146065186..146072580,11	MCF-7	breast:
5	chr6:146068024..146070341-chr6:146076357..146078713,3	K562	blood:

Variant related genes	Relation type
ENSG00000270638	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270828	Chromatin interaction

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs12111090	0.88[AFR][1000 genomes]
rs12111476	0.88[AFR][1000 genomes]
rs1591698	0.95[AFR][1000 genomes]
rs17223456	1.00[ASN][1000 genomes]
rs17821586	1.00[ASN][1000 genomes]
rs17821684	1.00[ASN][1000 genomes]
rs17821702	1.00[ASN][1000 genomes]
rs17822170	1.00[ASN][1000 genomes]
rs1856245	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935614	1.00[ASN][1000 genomes]
rs1988640	1.00[ASN][1000 genomes]
rs2068029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479261	0.85[AFR][1000 genomes]
rs28568954	1.00[ASN][1000 genomes]
rs28587324	0.95[AFR][1000 genomes]
rs28829296	0.95[AFR][1000 genomes]
rs3891273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4343934	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895677	1.00[ASN][1000 genomes]
rs4895680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895685	1.00[ASN][1000 genomes]
rs4895686	1.00[ASN][1000 genomes]
rs4896819	1.00[ASN][1000 genomes]
rs4896823	1.00[ASN][1000 genomes]
rs4896825	1.00[ASN][1000 genomes]
rs4896830	1.00[ASN][1000 genomes]
rs4896834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896846	1.00[ASN][1000 genomes]
rs4896847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896849	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55658016	0.95[AFR][1000 genomes]
rs55746945	0.95[AFR][1000 genomes]
rs55813779	0.87[AFR][1000 genomes]
rs55814547	0.87[AFR][1000 genomes]
rs55820518	0.82[AFR][1000 genomes]
rs56116838	0.88[AFR][1000 genomes]
rs56198487	0.81[AFR][1000 genomes]
rs56241331	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56282473	0.87[AFR][1000 genomes]
rs56864636	0.82[AFR][1000 genomes]
rs56950953	0.87[AFR][1000 genomes]
rs57105639	0.95[AFR][1000 genomes]
rs57646957	0.85[AFR][1000 genomes]
rs58588227	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58658594	0.84[AMR][1000 genomes]
rs59135568	0.88[AFR][1000 genomes]
rs59557516	0.85[AFR][1000 genomes]
rs60043524	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60162832	0.93[AFR][1000 genomes]
rs60609437	0.93[AFR][1000 genomes]
rs60875801	0.84[AFR][1000 genomes]
rs61014905	0.85[AFR][1000 genomes]
rs61041405	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61121433	0.88[AFR][1000 genomes]
rs61358848	0.84[AMR][1000 genomes]
rs61638226	0.84[AMR][1000 genomes]
rs6570702	0.88[AFR][1000 genomes]
rs6570707	0.88[AFR][1000 genomes]
rs6570709	0.88[AFR][1000 genomes]
rs6570710	0.95[AFR][1000 genomes]
rs6570714	0.94[AFR][1000 genomes]
rs6570720	0.92[AFR][1000 genomes]
rs6570721	0.90[AMR][1000 genomes]
rs6570722	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6900158	0.98[AFR][1000 genomes]
rs6901219	0.98[AFR][1000 genomes]
rs6901587	0.93[AFR][1000 genomes]
rs6902273	0.88[AFR][1000 genomes]
rs6902358	0.93[AFR][1000 genomes]
rs6902952	0.90[AFR][1000 genomes]
rs6908707	0.87[AFR][1000 genomes]
rs6913497	0.90[AFR][1000 genomes]
rs6914491	0.94[AFR][1000 genomes]
rs6914746	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6918350	0.88[AFR][1000 genomes]
rs6918739	0.85[AFR][1000 genomes]
rs6919173	0.88[AFR][1000 genomes]
rs6920248	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921110	0.98[AFR][1000 genomes]
rs6921551	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6927960	0.95[AFR][1000 genomes]
rs6928780	0.95[AFR][1000 genomes]
rs6930335	0.95[AFR][1000 genomes]
rs6931280	0.95[AFR][1000 genomes]
rs6938028	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6940415	0.90[AFR][1000 genomes]
rs7341315	1.00[ASN][1000 genomes]
rs734166	1.00[ASN][1000 genomes]
rs73564486	0.85[AFR][1000 genomes]
rs73566113	0.92[AFR][1000 genomes]
rs73566115	0.95[AFR][1000 genomes]
rs73566121	0.95[AFR][1000 genomes]
rs73566126	0.95[AFR][1000 genomes]
rs73566139	0.98[AFR][1000 genomes]
rs73566140	0.98[AFR][1000 genomes]
rs73566157	0.99[AFR][1000 genomes]
rs73566168	0.99[AFR][1000 genomes]
rs73566721	0.83[AFR][1000 genomes]
rs73566724	0.85[AFR][1000 genomes]
rs73566728	0.85[AFR][1000 genomes]
rs73566742	0.85[AFR][1000 genomes]
rs73566747	0.85[AFR][1000 genomes]
rs73566751	0.85[AFR][1000 genomes]
rs73566754	0.85[AFR][1000 genomes]
rs73566757	0.84[AFR][1000 genomes]
rs73568127	1.00[AFR][1000 genomes]
rs73568130	0.99[AFR][1000 genomes]
rs73568133	0.99[AFR][1000 genomes]
rs73568134	0.99[AFR][1000 genomes]
rs73568145	0.94[AFR][1000 genomes]
rs73568148	0.94[AFR][1000 genomes]
rs73568151	0.94[AFR][1000 genomes]
rs73568185	0.90[AFR][1000 genomes]
rs73568188	0.92[AFR][1000 genomes]
rs73568362	0.87[AFR][1000 genomes]
rs73568366	0.87[AFR][1000 genomes]
rs73568375	0.87[AFR][1000 genomes]
rs73568389	0.81[AFR][1000 genomes]
rs73570014	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73577358	0.88[AFR][1000 genomes]
rs73577363	0.88[AFR][1000 genomes]
rs73577384	0.88[AFR][1000 genomes]
rs73579478	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73579483	0.89[AFR][1000 genomes]
rs73579498	0.90[AFR][1000 genomes]
rs73782053	0.90[AFR][1000 genomes]
rs73782068	0.99[AFR][1000 genomes]
rs73784038	0.85[AFR][1000 genomes]
rs73784067	0.87[AFR][1000 genomes]
rs7738406	0.87[AFR][1000 genomes]
rs7738822	0.87[AFR][1000 genomes]
rs7738906	0.87[AFR][1000 genomes]
rs7741139	0.99[AFR][1000 genomes]
rs7744082	0.90[AFR][1000 genomes]
rs7745379	0.99[AFR][1000 genomes]
rs7745722	0.89[AFR][1000 genomes]
rs7750382	0.85[AFR][1000 genomes]
rs7753694	0.88[AFR][1000 genomes]
rs7753832	0.99[AFR][1000 genomes]
rs7754367	0.99[AFR][1000 genomes]
rs7757137	0.81[AFR][1000 genomes]
rs7758839	0.90[AFR][1000 genomes]
rs7759254	0.83[AFR][1000 genomes]
rs7761251	0.99[AFR][1000 genomes]
rs7761577	0.93[AFR][1000 genomes]
rs7763273	0.98[AFR][1000 genomes]
rs7768195	0.87[AFR][1000 genomes]
rs7771112	0.90[AFR][1000 genomes]
rs7771653	0.85[AFR][1000 genomes]
rs7772012	0.88[AFR][1000 genomes]
rs7772550	0.87[AFR][1000 genomes]
rs7773780	0.86[AFR][1000 genomes]
rs9485005	1.00[ASN][1000 genomes]
rs9497352	1.00[ASN][1000 genomes]
rs9497355	1.00[ASN][1000 genomes]
rs9497366	1.00[ASN][1000 genomes]
rs9497368	1.00[ASN][1000 genomes]
rs9766595	0.86[AFR][1000 genomes]
rs9766596	0.87[AFR][1000 genomes]
rs9767028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999860	1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146058600-146070600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:146066000-146070800	Weak transcription	HMEC	breast
3	chr6:146067400-146076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:146067600-146070800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:146067600-146076600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:146067800-146070600	Weak transcription	NHEK	skin
7	chr6:146068000-146070600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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