Variant report

Variant	rs6918350
Chromosome Location	chr6:146001024-146001025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs12111090	0.85[YRI][hapmap];0.95[AFR][1000 genomes]
rs12111476	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1591698	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28479261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587324	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28829296	0.93[AFR][1000 genomes]
rs4896845	0.82[AFR][1000 genomes]
rs4896847	0.82[AFR][1000 genomes]
rs55658016	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55746945	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55813779	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55814547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55820518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56116838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198487	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282473	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56864636	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56950953	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57105639	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57646957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58588227	0.88[AFR][1000 genomes]
rs59135568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59557516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60162832	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60609437	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61014905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61041405	0.95[AFR][1000 genomes]
rs61121433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570702	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6570704	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs6570707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570709	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570710	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570714	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570720	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6900158	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6901219	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6901587	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902358	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902952	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6904060	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs6908707	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913497	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6914491	0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6918739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919173	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920248	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6921110	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6925420	1.00[AMR][1000 genomes]
rs6927960	0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6928780	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6930335	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6931280	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940415	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6940752	1.00[AMR][1000 genomes]
rs6940930	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs73562628	1.00[AMR][1000 genomes]
rs73564486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566113	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566115	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566121	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566126	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566139	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566140	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566157	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566168	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566742	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566747	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566751	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568127	0.88[AFR][1000 genomes]
rs73568130	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568133	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568134	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568138	0.88[AFR][1000 genomes]
rs73568145	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568148	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568151	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568185	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568188	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568362	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568366	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568375	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568383	1.00[AMR][1000 genomes]
rs73568384	1.00[AMR][1000 genomes]
rs73568389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568402	1.00[AMR][1000 genomes]
rs73577358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579444	1.00[AMR][1000 genomes]
rs73579478	0.94[AFR][1000 genomes]
rs73579483	0.96[AFR][1000 genomes]
rs73579498	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782053	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73782068	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73784038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784067	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738406	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738822	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741139	0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7744082	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745379	0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745722	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7749377	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7751866	1.00[AMR][1000 genomes]
rs7753694	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753832	0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7754367	0.89[AFR][1000 genomes]
rs7757137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758839	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7759254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761251	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7761577	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7763273	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7768195	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771112	0.81[AFR][1000 genomes]
rs7771653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772550	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773780	0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9718033	0.83[AFR][1000 genomes]
rs9766595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9766596	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3407277	chr6:145998059-146002457	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
2	esv3323445	chr6:145999759-146003957	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
2	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:145974200-146002800	Weak transcription	Liver	Liver
4	chr6:145974800-146003600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:145980600-146010800	Weak transcription	Right Ventricle	heart
6	chr6:145982800-146003000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:145984400-146003000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:145986600-146006400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:145987600-146003000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:145988200-146002800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:145988400-146003000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:145988400-146003000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:145988600-146002800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:145988600-146003000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:145988600-146003000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:145989800-146003000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:145990200-146003000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:145990600-146004400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:145990800-146002800	Weak transcription	Brain Anterior Caudate	brain
20	chr6:145991000-146003200	Weak transcription	Fetal Thymus	thymus
21	chr6:145991200-146002800	Weak transcription	Ovary	ovary
22	chr6:145991200-146003000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:145991200-146008800	Weak transcription	Brain Angular Gyrus	brain
24	chr6:145991600-146002800	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:145991800-146002800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:145991800-146009200	Weak transcription	NHDF-Ad	bronchial
27	chr6:145992400-146003000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:145994200-146002800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:145994600-146007000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:145994800-146002800	Weak transcription	Primary B cells from cord blood	blood
31	chr6:145994800-146008400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:145995000-146010800	Weak transcription	Left Ventricle	heart
33	chr6:145995200-146003000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:145995200-146004000	Weak transcription	Fetal Stomach	stomach
35	chr6:145995200-146006400	Weak transcription	Lung	lung
36	chr6:145995200-146013200	Weak transcription	Pancreas	Pancrea
37	chr6:145995400-146003200	Weak transcription	Aorta	Aorta
38	chr6:145998000-146003200	Weak transcription	Fetal Brain Male	brain
39	chr6:145998800-146010800	Weak transcription	HSMMtube	muscle
40	chr6:145999000-146001200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:145999000-146010800	Weak transcription	Psoas Muscle	Psoas
42	chr6:145999400-146003000	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:145999600-146002800	Weak transcription	Brain Hippocampus Middle	brain
44	chr6:145999600-146008600	Weak transcription	Fetal Intestine Large	intestine
45	chr6:146000000-146002800	Weak transcription	Brain Germinal Matrix	brain
46	chr6:146000000-146002800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:146000400-146001200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:146000600-146003400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:146000600-146010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:146000800-146003000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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