Variant report

Variant	rs6570714
Chromosome Location	chr6:146075679-146075680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146054981..146057091-chr6:146075501..146078402,2	K562	blood:
2	chr6:146052881..146057901-chr6:146075302..146079376,6	MCF-7	breast:
3	chr6:146054115..146058275-chr6:146075564..146080961,9	MCF-7	breast:
4	chr6:146075333..146076897-chr6:146083463..146085430,2	K562	blood:

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs12111090	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12111476	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1591698	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479261	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28587324	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28829296	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4896845	0.98[AFR][1000 genomes]
rs4896847	0.98[AFR][1000 genomes]
rs55658016	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55746945	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55813779	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55814547	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55820518	0.83[AMR][1000 genomes]
rs56116838	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56198487	0.83[AMR][1000 genomes]
rs56241331	0.88[AFR][1000 genomes]
rs56282473	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56864636	0.83[AMR][1000 genomes]
rs56950953	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56954340	0.85[AMR][1000 genomes]
rs57057101	0.85[AMR][1000 genomes]
rs57105639	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57646957	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58588227	0.94[AFR][1000 genomes]
rs59135568	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59557516	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60162832	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60609437	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60875801	0.81[AFR][1000 genomes]
rs61014905	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61121433	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570702	0.85[AFR][1000 genomes]
rs6570704	0.83[AMR][1000 genomes]
rs6570707	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570709	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570710	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900158	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900565	0.85[AMR][1000 genomes]
rs6901219	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901587	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902273	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902358	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902952	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904060	0.83[AMR][1000 genomes]
rs6908707	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6913497	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918350	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6918739	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6919173	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6920248	0.93[AFR][1000 genomes]
rs6921110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925420	0.83[AMR][1000 genomes]
rs6927960	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928780	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930335	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931280	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938895	0.85[AMR][1000 genomes]
rs6940256	0.85[AMR][1000 genomes]
rs6940415	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940752	0.83[AMR][1000 genomes]
rs6940930	0.83[AMR][1000 genomes]
rs73564486	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566115	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566121	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566140	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73566721	0.83[AMR][1000 genomes]
rs73566724	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566728	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566742	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566747	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566751	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566754	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73566757	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568127	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73568130	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568133	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568138	0.94[AFR][1000 genomes]
rs73568145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568362	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568366	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568375	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73568383	0.83[AMR][1000 genomes]
rs73568384	0.83[AMR][1000 genomes]
rs73568389	0.83[AMR][1000 genomes]
rs73568402	0.83[AMR][1000 genomes]
rs73570006	0.85[AMR][1000 genomes]
rs73570010	0.85[AMR][1000 genomes]
rs73570033	0.85[AMR][1000 genomes]
rs73570037	0.85[AMR][1000 genomes]
rs73572161	0.85[AMR][1000 genomes]
rs73577358	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577363	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73577384	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73579444	0.83[AMR][1000 genomes]
rs73579478	0.84[AFR][1000 genomes]
rs73579483	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73579498	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782053	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782068	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784038	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73784067	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738406	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738822	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7738906	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7741139	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745379	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745722	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749377	0.83[AMR][1000 genomes]
rs7750382	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7751866	0.83[AMR][1000 genomes]
rs7753694	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7753832	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754367	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7757137	0.83[AMR][1000 genomes]
rs7758839	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759254	0.83[AMR][1000 genomes]
rs7761251	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761577	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768195	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7771112	0.87[AFR][1000 genomes]
rs7771653	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772012	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7772550	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7773780	0.82[AFR][1000 genomes]
rs9718033	0.91[AMR][1000 genomes]
rs9766595	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9766596	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146067400-146076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:146067600-146076600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146071200-146076400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:146071200-146076400	Weak transcription	HMEC	breast
5	chr6:146071200-146076400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:146071200-146076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:146071400-146076600	Weak transcription	NHDF-Ad	bronchial
8	chr6:146071400-146076800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:146071400-146076800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:146071400-146077000	Weak transcription	HSMM	muscle
11	chr6:146071600-146076400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:146071600-146076400	Weak transcription	NHEK	skin
13	chr6:146071600-146076800	Weak transcription	NHLF	lung
14	chr6:146071800-146076400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:146074200-146077000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:146074400-146079200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:146074600-146076600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links