Variant report

Variant	rs60043524
Chromosome Location	chr6:146107741-146107742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146107452..146110586-chr6:146133888..146136897,3	K562	blood:
2	chr6:146054610..146058060-chr6:146107299..146111680,4	K562	blood:
3	chr6:146105593..146108141-chr6:146123626..146125725,2	K562	blood:
4	chr6:146101702..146103608-chr6:146107062..146109718,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270638	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs17223456	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821586	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821684	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821702	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822170	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856245	1.00[ASN][1000 genomes]
rs1935614	1.00[ASN][1000 genomes]
rs1988640	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068029	1.00[ASN][1000 genomes]
rs28568954	1.00[ASN][1000 genomes]
rs3891273	1.00[ASN][1000 genomes]
rs4343934	1.00[ASN][1000 genomes]
rs4895680	1.00[ASN][1000 genomes]
rs4895681	1.00[ASN][1000 genomes]
rs4895685	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895686	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896823	1.00[ASN][1000 genomes]
rs4896825	1.00[ASN][1000 genomes]
rs4896830	1.00[ASN][1000 genomes]
rs4896834	1.00[ASN][1000 genomes]
rs4896845	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896846	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896847	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896849	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241331	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56954340	0.98[AFR][1000 genomes]
rs57057101	0.98[AFR][1000 genomes]
rs58588227	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61041405	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570722	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900565	0.96[AFR][1000 genomes]
rs6914746	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920248	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6921551	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938028	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938895	0.99[AFR][1000 genomes]
rs6940256	0.89[AFR][1000 genomes]
rs7341315	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734166	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73568138	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73570006	0.99[AFR][1000 genomes]
rs73570010	0.98[AFR][1000 genomes]
rs73570014	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73570033	0.96[AFR][1000 genomes]
rs73570037	0.96[AFR][1000 genomes]
rs73572161	0.93[AFR][1000 genomes]
rs73579478	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9485005	1.00[ASN][1000 genomes]
rs9497352	1.00[ASN][1000 genomes]
rs9497355	1.00[ASN][1000 genomes]
rs9497366	1.00[ASN][1000 genomes]
rs9497368	1.00[ASN][1000 genomes]
rs9767028	1.00[ASN][1000 genomes]
rs999860	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146100600-146123200	Weak transcription	HUVEC	blood vessel
2	chr6:146101000-146112200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:146101400-146109400	Weak transcription	Gastric	stomach
4	chr6:146101400-146110000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:146101400-146110800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:146101600-146110000	Weak transcription	Fetal Lung	lung
7	chr6:146101800-146114000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:146102400-146110600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:146103000-146109200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:146103000-146119400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:146103800-146109400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:146104400-146111200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:146104600-146118800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:146104600-146127000	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:146104800-146108200	Weak transcription	HepG2	liver
16	chr6:146104800-146109600	Weak transcription	Brain Angular Gyrus	brain
17	chr6:146104800-146110200	Weak transcription	Spleen	Spleen
18	chr6:146104800-146111400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:146104800-146112400	Weak transcription	Right Atrium	heart
20	chr6:146105000-146108200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:146105000-146123200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:146105200-146134400	Weak transcription	Thymus	Thymus
23	chr6:146105400-146108000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:146105400-146112000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:146105400-146125800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:146105600-146119000	Weak transcription	NH-A	brain
27	chr6:146105800-146125600	Weak transcription	Fetal Kidney	kidney
28	chr6:146106000-146133600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:146106200-146108400	Weak transcription	HSMM	muscle
30	chr6:146106200-146110600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:146106200-146111400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:146106200-146113800	Weak transcription	Dnd41	blood
33	chr6:146106400-146108000	Weak transcription	K562	blood
34	chr6:146106400-146108200	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:146106400-146110600	Weak transcription	Fetal Heart	heart
36	chr6:146106600-146111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:146106600-146118400	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:146106600-146122200	Weak transcription	NHLF	lung
39	chr6:146106800-146109600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:146106800-146109800	Weak transcription	Brain Substantia Nigra	brain
41	chr6:146106800-146110400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:146106800-146121200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:146106800-146122800	Weak transcription	HSMMtube	muscle
44	chr6:146107000-146108800	Weak transcription	Brain Germinal Matrix	brain
45	chr6:146107000-146108800	Weak transcription	Psoas Muscle	Psoas
46	chr6:146107000-146109000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:146107000-146109000	Weak transcription	Fetal Brain Female	brain
48	chr6:146107000-146109000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:146107000-146109600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:146107000-146109600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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