Variant report

Variant	rs9497407
Chromosome Location	chr6:146079562-146079563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146055254..146056868-chr6:146078510..146080192,2	K562	blood:
2	chr6:146055254..146057948-chr6:146078692..146080698,2	K562	blood:
3	chr6:146078233..146080576-chr6:146117352..146119241,2	K562	blood:
4	chr6:146071338..146074051-chr6:146075852..146079781,4	K562	blood:
5	chr6:146077264..146080093-chr6:146082462..146084742,2	K562	blood:
6	chr6:146054115..146058275-chr6:146075564..146080961,9	MCF-7	breast:
7	chr6:146077433..146080093-chr6:146081653..146083962,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs9485012	1.00[AMR][1000 genomes]
rs9485025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9485030	0.87[YRI][hapmap];1.00[AFR][1000 genomes]
rs9485038	0.86[AFR][1000 genomes]
rs9497376	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9497382	1.00[AMR][1000 genomes]
rs9497405	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497438	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146077400-146079800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:146079000-146081000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:146079200-146079800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:146079200-146080000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:146079400-146079600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:146079400-146080000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:146079400-146080000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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