Variant report

Variant	rs9485038
Chromosome Location	chr6:146305620-146305621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs9485025	0.86[AFR][1000 genomes]
rs9485030	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497407	0.86[AFR][1000 genomes]
rs9497408	0.86[AFR][1000 genomes]
rs9497416	0.86[AFR][1000 genomes]
rs9497417	0.86[AFR][1000 genomes]
rs9497437	1.00[AMR][1000 genomes]
rs9497438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497451	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497452	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9485038	AHSP	trans	lymphoblastoid	seeQTL
rs9485038	FAM118A	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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