Variant report

Variant	rs9497408
Chromosome Location	chr6:146082487-146082488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs9485012	1.00[AMR][1000 genomes]
rs9485025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9485030	0.88[YRI][hapmap];1.00[AFR][1000 genomes]
rs9485038	0.86[AFR][1000 genomes]
rs9497376	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9497382	1.00[AMR][1000 genomes]
rs9497405	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497407	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497438	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146080000-146084200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:146082200-146083000	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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