Variant report

Variant	rs73580169
Chromosome Location	chr6:146221848-146221849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146220306..146222663-chr6:146235095..146237007,2	K562	blood:
2	chr6:146221103..146223678-chr6:146224120..146226593,3	K562	blood:
3	chr6:146221312..146222849-chr6:146224699..146226855,2	K562	blood:
4	chr6:146220104..146222683-chr6:146242186..146243850,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs12332892	1.00[EUR][1000 genomes]
rs28738876	1.00[EUR][1000 genomes]
rs55671343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55879513	1.00[EUR][1000 genomes]
rs56954340	1.00[EUR][1000 genomes]
rs57057101	1.00[EUR][1000 genomes]
rs57776904	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57889864	1.00[EUR][1000 genomes]
rs58290238	1.00[EUR][1000 genomes]
rs58702332	1.00[EUR][1000 genomes]
rs59951042	1.00[EUR][1000 genomes]
rs60430705	1.00[EUR][1000 genomes]
rs60698481	1.00[EUR][1000 genomes]
rs60885622	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60899243	1.00[EUR][1000 genomes]
rs6570725	1.00[EUR][1000 genomes]
rs6570727	1.00[EUR][1000 genomes]
rs6570730	1.00[EUR][1000 genomes]
rs6900565	1.00[EUR][1000 genomes]
rs6900607	1.00[EUR][1000 genomes]
rs6904612	1.00[EUR][1000 genomes]
rs6918314	1.00[EUR][1000 genomes]
rs6920565	1.00[EUR][1000 genomes]
rs6924714	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6928607	1.00[EUR][1000 genomes]
rs6935019	1.00[EUR][1000 genomes]
rs6936647	1.00[EUR][1000 genomes]
rs6936879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938895	1.00[EUR][1000 genomes]
rs6940256	1.00[EUR][1000 genomes]
rs73566143	1.00[EUR][1000 genomes]
rs73570006	1.00[EUR][1000 genomes]
rs73570010	1.00[EUR][1000 genomes]
rs73570033	1.00[EUR][1000 genomes]
rs73570037	1.00[EUR][1000 genomes]
rs73570042	1.00[EUR][1000 genomes]
rs73572161	1.00[EUR][1000 genomes]
rs73572189	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73574105	1.00[EUR][1000 genomes]
rs73576133	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576161	1.00[EUR][1000 genomes]
rs73576173	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576180	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576928	1.00[EUR][1000 genomes]
rs73578805	1.00[EUR][1000 genomes]
rs73578807	1.00[EUR][1000 genomes]
rs73578811	1.00[EUR][1000 genomes]
rs73578812	1.00[EUR][1000 genomes]
rs73578814	1.00[EUR][1000 genomes]
rs73578823	1.00[EUR][1000 genomes]
rs73578827	1.00[EUR][1000 genomes]
rs73578832	1.00[EUR][1000 genomes]
rs73578833	1.00[EUR][1000 genomes]
rs73580158	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580174	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580180	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580202	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582109	1.00[EUR][1000 genomes]
rs73582112	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582116	1.00[EUR][1000 genomes]
rs73582125	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582139	1.00[EUR][1000 genomes]
rs73582149	1.00[EUR][1000 genomes]
rs73582176	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582189	1.00[EUR][1000 genomes]
rs73584226	1.00[EUR][1000 genomes]
rs7739858	1.00[EUR][1000 genomes]
rs7740567	1.00[EUR][1000 genomes]
rs7757974	1.00[EUR][1000 genomes]
rs7762880	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9322040	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9485028	0.95[AFR][1000 genomes]
rs9497422	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497430	1.00[EUR][1000 genomes]
rs9497449	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv437525	chr6:146212285-146230454	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146198200-146225600	Weak transcription	HSMMtube	muscle
2	chr6:146200400-146228600	Weak transcription	Pancreas	Pancrea
3	chr6:146201200-146225600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:146201200-146230400	Weak transcription	NHEK	skin
5	chr6:146204800-146224800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:146207800-146240200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:146208800-146230000	Weak transcription	Colonic Mucosa	Colon
8	chr6:146210200-146231000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:146210400-146230400	Weak transcription	NH-A	brain
10	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
11	chr6:146211200-146224800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:146211600-146236000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:146212800-146226000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:146213800-146225000	Weak transcription	Brain Substantia Nigra	brain
15	chr6:146213800-146230400	Weak transcription	HUVEC	blood vessel
16	chr6:146215000-146225800	Weak transcription	Placenta	Placenta
17	chr6:146215000-146242200	Weak transcription	Hela-S3	cervix
18	chr6:146215200-146224600	Weak transcription	HSMM	muscle
19	chr6:146215400-146222400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:146216800-146224600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:146219000-146228000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr6:146219000-146228000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:146219200-146223800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:146219200-146224000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:146219200-146224400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:146219200-146224600	Weak transcription	Brain Anterior Caudate	brain
27	chr6:146219200-146224600	Weak transcription	NHLF	lung
28	chr6:146219200-146225000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:146219200-146226400	Weak transcription	Brain Angular Gyrus	brain
30	chr6:146219200-146226800	Weak transcription	Fetal Brain Female	brain
31	chr6:146219200-146227800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:146219200-146249200	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:146219400-146224600	Weak transcription	Osteobl	bone
35	chr6:146219600-146222000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:146219600-146250600	Strong transcription	Dnd41	blood
37	chr6:146219800-146222400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:146219800-146222600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:146219800-146224000	Strong transcription	Primary T cells from cord blood	blood
40	chr6:146219800-146226600	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr6:146219800-146227800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:146219800-146271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:146220000-146222200	Weak transcription	Fetal Brain Male	brain
44	chr6:146220000-146224600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:146220000-146224600	Weak transcription	NHDF-Ad	bronchial
46	chr6:146220000-146224800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:146220000-146225600	Weak transcription	Right Ventricle	heart
48	chr6:146220000-146225600	Weak transcription	GM12878-XiMat	blood
49	chr6:146220000-146225800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:146220000-146227000	Weak transcription	Fetal Muscle Trunk	muscle

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