The 2.0 version of rSNPBase

Variant report

Variant rs55879513
Chromosome Location chr6:146199124-146199125
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:146172200-146202400 Weak transcription Adipose Nuclei Adipose
2 chr6:146177600-146204200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr6:146185200-146212200 Weak transcription Primary neutrophils fromperipheralblood blood
4 chr6:146186400-146213200 Weak transcription Brain Anterior Caudate brain
5 chr6:146186800-146199400 Weak transcription Brain Hippocampus Middle brain
6 chr6:146188000-146201400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr6:146188000-146218800 Weak transcription Right Ventricle heart
8 chr6:146188400-146201200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr6:146188800-146209000 Weak transcription Primary T cells fromperipheralblood blood
10 chr6:146189200-146202400 Weak transcription Thymus Thymus
11 chr6:146189400-146201400 Weak transcription Dnd41 blood
12 chr6:146189400-146202800 Weak transcription Stomach Smooth Muscle stomach
13 chr6:146189400-146214400 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr6:146189600-146211800 Weak transcription Primary B cells from peripheral blood blood
15 chr6:146193400-146207600 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr6:146193800-146201600 Weak transcription HSMM muscle
17 chr6:146194000-146211800 Weak transcription Primary hematopoietic stem cells blood
18 chr6:146194200-146202400 Weak transcription Primary T cells from cord blood blood
19 chr6:146194800-146212400 Weak transcription HUVEC blood vessel
20 chr6:146195000-146209400 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr6:146196000-146199400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr6:146196200-146210000 Weak transcription Fetal Brain Male brain
23 chr6:146196600-146202200 Weak transcription Left Ventricle heart
24 chr6:146196600-146202400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr6:146196600-146202400 Weak transcription Fetal Muscle Leg muscle
26 chr6:146196600-146212200 Weak transcription Aorta Aorta
27 chr6:146196600-146219600 Weak transcription HMEC breast
28 chr6:146196800-146209000 Weak transcription Duodenum Mucosa Duodenum
29 chr6:146197000-146199600 Weak transcription Colon Smooth Muscle Colon
30 chr6:146197000-146200800 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr6:146197000-146202400 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr6:146197200-146201800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr6:146197200-146202600 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr6:146197200-146209000 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr6:146197400-146199200 Weak transcription NHDF-Ad bronchial
36 chr6:146197400-146203000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr6:146197600-146199400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr6:146197600-146202400 Weak transcription Ovary ovary
39 chr6:146197800-146199200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr6:146197800-146219600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr6:146198000-146202400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr6:146198000-146204000 Weak transcription Psoas Muscle Psoas
43 chr6:146198000-146204000 Weak transcription Monocytes-CD14+_RO01746 blood
44 chr6:146198000-146204400 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr6:146198000-146204800 Weak transcription Primary monocytes fromperipheralblood blood
46 chr6:146198000-146209400 Weak transcription Brain Substantia Nigra brain
47 chr6:146198000-146209600 Weak transcription Fetal Brain Female brain
48 chr6:146198200-146202400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr6:146198200-146202600 Weak transcription GM12878-XiMat blood
50 chr6:146198200-146212400 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015