Variant report

Variant	rs73578833
Chromosome Location	chr6:146414864-146414865
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs12332892	1.00[EUR][1000 genomes]
rs28738876	1.00[EUR][1000 genomes]
rs55671343	1.00[EUR][1000 genomes]
rs55879513	1.00[EUR][1000 genomes]
rs57776904	1.00[EUR][1000 genomes]
rs57889864	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58702332	1.00[EUR][1000 genomes]
rs59951042	1.00[EUR][1000 genomes]
rs60430705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60885622	1.00[EUR][1000 genomes]
rs6570730	1.00[EUR][1000 genomes]
rs6900607	1.00[EUR][1000 genomes]
rs6904612	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6905255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923199	1.00[EUR][1000 genomes]
rs6924714	1.00[EUR][1000 genomes]
rs6927890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6928607	1.00[EUR][1000 genomes]
rs6935019	1.00[EUR][1000 genomes]
rs6936647	1.00[EUR][1000 genomes]
rs6936879	1.00[EUR][1000 genomes]
rs73573176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576173	1.00[EUR][1000 genomes]
rs73576180	1.00[EUR][1000 genomes]
rs73576928	1.00[EUR][1000 genomes]
rs73576998	0.82[AFR][1000 genomes]
rs73577141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578805	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73578807	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578811	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578812	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578814	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578823	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578832	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580158	1.00[EUR][1000 genomes]
rs73580169	1.00[EUR][1000 genomes]
rs73580174	1.00[EUR][1000 genomes]
rs73580180	1.00[EUR][1000 genomes]
rs73580202	1.00[EUR][1000 genomes]
rs73582109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582112	1.00[EUR][1000 genomes]
rs73582116	1.00[EUR][1000 genomes]
rs73582125	1.00[EUR][1000 genomes]
rs73582139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582149	1.00[EUR][1000 genomes]
rs73582176	1.00[EUR][1000 genomes]
rs73582189	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73584226	1.00[EUR][1000 genomes]
rs7739858	1.00[EUR][1000 genomes]
rs7740567	1.00[EUR][1000 genomes]
rs7757974	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762880	1.00[EUR][1000 genomes]
rs9322040	1.00[EUR][1000 genomes]
rs9497423	1.00[EUR][1000 genomes]
rs9497430	1.00[EUR][1000 genomes]
rs9497449	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146414200-146415400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:146414400-146415000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:146414400-146415200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:146414400-146415400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:146414600-146415000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:146414600-146415800	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links