Variant report

Variant	rs73577145
Chromosome Location	chr6:146593163-146593164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs3025915	1.00[EUR][1000 genomes]
rs57889864	1.00[EUR][1000 genomes]
rs58843408	1.00[EUR][1000 genomes]
rs60430705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570756	1.00[EUR][1000 genomes]
rs6570758	1.00[EUR][1000 genomes]
rs6905255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918099	1.00[EUR][1000 genomes]
rs6923199	1.00[EUR][1000 genomes]
rs6927890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576928	1.00[EUR][1000 genomes]
rs73577141	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577157	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577174	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578805	1.00[EUR][1000 genomes]
rs73578807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7739858	1.00[EUR][1000 genomes]
rs7757974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760995	1.00[EUR][1000 genomes]
rs7769505	1.00[EUR][1000 genomes]
rs9322056	1.00[EUR][1000 genomes]
rs9497449	1.00[EUR][1000 genomes]
rs9497540	1.00[EUR][1000 genomes]
rs9497541	1.00[EUR][1000 genomes]
rs9497542	1.00[EUR][1000 genomes]
rs9497543	1.00[EUR][1000 genomes]
rs996042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830836	chr6:146423405-146598983	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146591000-146593800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:146591000-146593800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:146591000-146594200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:146591000-146594400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:146591800-146596200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:146592400-146595000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:146592800-146593200	Enhancers	Fetal Heart	heart
8	chr6:146592800-146594200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:146592800-146594200	Weak transcription	Brain Germinal Matrix	brain
10	chr6:146593000-146593200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:146593000-146593400	Enhancers	Pancreatic Islets	Pancreatic Islet

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