Variant report
| Variant | rs7769505 |
|---|---|
| Chromosome Location | chr6:146741533-146741534 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:146739309..146742145-chr6:146746439..146749408,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs28411893 | 1.00[EUR][1000 genomes] |
| rs3025915 | 1.00[EUR][1000 genomes] |
| rs362829 | 1.00[TSI][hapmap] |
| rs4291110 | 1.00[EUR][1000 genomes] |
| rs58843408 | 1.00[EUR][1000 genomes] |
| rs6570756 | 1.00[EUR][1000 genomes] |
| rs6570758 | 1.00[EUR][1000 genomes] |
| rs6901569 | 1.00[EUR][1000 genomes] |
| rs6902315 | 1.00[EUR][1000 genomes] |
| rs6905255 | 1.00[EUR][1000 genomes] |
| rs6912218 | 1.00[EUR][1000 genomes] |
| rs6918099 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs6923199 | 1.00[EUR][1000 genomes] |
| rs73575041 | 1.00[EUR][1000 genomes] |
| rs73577141 | 1.00[EUR][1000 genomes] |
| rs73577145 | 1.00[EUR][1000 genomes] |
| rs73577150 | 1.00[EUR][1000 genomes] |
| rs73577157 | 1.00[EUR][1000 genomes] |
| rs73577164 | 1.00[EUR][1000 genomes] |
| rs73577174 | 1.00[EUR][1000 genomes] |
| rs73577179 | 1.00[EUR][1000 genomes] |
| rs7760995 | 1.00[EUR][1000 genomes] |
| rs9322056 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs9322062 | 1.00[EUR][1000 genomes] |
| rs9485093 | 1.00[EUR][1000 genomes] |
| rs9485094 | 1.00[EUR][1000 genomes] |
| rs9497540 | 1.00[EUR][1000 genomes] |
| rs9497541 | 1.00[EUR][1000 genomes] |
| rs9497542 | 1.00[EUR][1000 genomes] |
| rs9497543 | 1.00[EUR][1000 genomes] |
| rs9497557 | 1.00[EUR][1000 genomes] |
| rs9497561 | 1.00[EUR][1000 genomes] |
| rs9497570 | 1.00[EUR][1000 genomes] |
| rs996042 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604839 | chr6:146305810-146828922 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033913 | chr6:146572989-147092365 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv538466 | chr6:146572989-147092365 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv886749 | chr6:146679735-147123699 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:146739200-146744000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
