Variant report

Variant	rs9497540
Chromosome Location	chr6:146739834-146739835
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs28411893	1.00[EUR][1000 genomes]
rs3025915	1.00[EUR][1000 genomes]
rs362829	1.00[TSI][hapmap]
rs4291110	1.00[EUR][1000 genomes]
rs58843408	1.00[EUR][1000 genomes]
rs6570756	1.00[EUR][1000 genomes]
rs6570758	1.00[EUR][1000 genomes]
rs6901569	1.00[EUR][1000 genomes]
rs6902315	1.00[EUR][1000 genomes]
rs6905255	1.00[EUR][1000 genomes]
rs6912218	1.00[EUR][1000 genomes]
rs6918099	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6923199	1.00[EUR][1000 genomes]
rs73575041	1.00[EUR][1000 genomes]
rs73577141	1.00[EUR][1000 genomes]
rs73577145	1.00[EUR][1000 genomes]
rs73577150	1.00[EUR][1000 genomes]
rs73577157	1.00[EUR][1000 genomes]
rs73577164	1.00[EUR][1000 genomes]
rs73577174	1.00[EUR][1000 genomes]
rs73577179	1.00[EUR][1000 genomes]
rs7760995	1.00[EUR][1000 genomes]
rs7769505	1.00[EUR][1000 genomes]
rs9322056	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9322062	1.00[EUR][1000 genomes]
rs9485093	1.00[EUR][1000 genomes]
rs9485094	1.00[EUR][1000 genomes]
rs9497541	1.00[EUR][1000 genomes]
rs9497542	1.00[EUR][1000 genomes]
rs9497543	1.00[EUR][1000 genomes]
rs9497557	1.00[EUR][1000 genomes]
rs9497561	1.00[EUR][1000 genomes]
rs9497570	1.00[EUR][1000 genomes]
rs996042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146739200-146744000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links