Variant report

Variant	rs6902315
Chromosome Location	chr6:146881794-146881795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146879793..146881818-chr6:146885067..146887501,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28411893	1.00[EUR][1000 genomes]
rs362829	1.00[TSI][hapmap]
rs4291110	1.00[EUR][1000 genomes]
rs58843408	1.00[EUR][1000 genomes]
rs6570756	1.00[EUR][1000 genomes]
rs6570758	1.00[EUR][1000 genomes]
rs6901569	1.00[EUR][1000 genomes]
rs6918099	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7747387	1.00[TSI][hapmap]
rs7769505	1.00[EUR][1000 genomes]
rs9322056	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9322062	1.00[EUR][1000 genomes]
rs9485093	1.00[EUR][1000 genomes]
rs9485094	1.00[EUR][1000 genomes]
rs9497540	1.00[EUR][1000 genomes]
rs9497541	1.00[EUR][1000 genomes]
rs9497542	1.00[EUR][1000 genomes]
rs9497543	1.00[EUR][1000 genomes]
rs9497557	1.00[EUR][1000 genomes]
rs9497561	1.00[EUR][1000 genomes]
rs9497570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs996042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv981345	chr6:146880013-146886526	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146866400-146881800	Weak transcription	Brain Germinal Matrix	brain
2	chr6:146866600-146883800	Weak transcription	Small Intestine	intestine
3	chr6:146866600-146885800	Weak transcription	Pancreas	Pancrea
4	chr6:146876400-146883600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:146876400-146891400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:146876600-146891200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:146876800-146881800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:146876800-146881800	Weak transcription	HUVEC	blood vessel
9	chr6:146876800-146882200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:146876800-146882200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:146876800-146882200	Weak transcription	Liver	Liver
12	chr6:146876800-146883600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:146876800-146889000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:146877000-146882400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:146877000-146882400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:146877000-146883000	Weak transcription	HSMM	muscle
17	chr6:146877600-146881800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:146879400-146881800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:146880200-146882200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:146880400-146883800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:146880600-146882200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:146881000-146883600	Weak transcription	NHDF-Ad	bronchial
23	chr6:146881400-146882400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr6:146881400-146882400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:146881400-146882400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:146881400-146882400	Enhancers	Monocytes-CD14+_RO01746	blood

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