Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs28411893	1.00[EUR][1000 genomes]
rs3025915	1.00[EUR][1000 genomes]
rs4291110	1.00[EUR][1000 genomes]
rs58843408	1.00[EUR][1000 genomes]
rs6570756	1.00[EUR][1000 genomes]
rs6570758	1.00[EUR][1000 genomes]
rs6901569	1.00[EUR][1000 genomes]
rs6902315	1.00[EUR][1000 genomes]
rs6905255	1.00[EUR][1000 genomes]
rs6912218	1.00[EUR][1000 genomes]
rs6918099	1.00[EUR][1000 genomes]
rs6923199	1.00[EUR][1000 genomes]
rs73575041	1.00[EUR][1000 genomes]
rs73577141	1.00[EUR][1000 genomes]
rs73577145	1.00[EUR][1000 genomes]
rs73577150	1.00[EUR][1000 genomes]
rs73577157	1.00[EUR][1000 genomes]
rs73577164	1.00[EUR][1000 genomes]
rs73577174	1.00[EUR][1000 genomes]
rs73577179	1.00[EUR][1000 genomes]
rs7760995	1.00[EUR][1000 genomes]
rs7769505	1.00[EUR][1000 genomes]
rs9322056	1.00[EUR][1000 genomes]
rs9322062	1.00[EUR][1000 genomes]
rs9485093	1.00[EUR][1000 genomes]
rs9485094	1.00[EUR][1000 genomes]
rs9497540	1.00[EUR][1000 genomes]
rs9497541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497543	1.00[EUR][1000 genomes]
rs9497557	1.00[EUR][1000 genomes]
rs9497561	1.00[EUR][1000 genomes]
rs9497570	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146744800-146755200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:146750200-146751200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:146750200-146751200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:146750400-146751200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:146750600-146751200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:146750600-146751200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:146750600-146751200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:146750600-146751200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:146750600-146751200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:146750600-146751200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:146750600-146752400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:146750800-146751400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:146751000-146751600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:146751000-146755000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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