Variant report

Variant	rs6923199
Chromosome Location	chr6:146609027-146609028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs28411893	1.00[EUR][1000 genomes]
rs3025915	1.00[EUR][1000 genomes]
rs4895695	0.81[AFR][1000 genomes]
rs57889864	1.00[EUR][1000 genomes]
rs58843408	1.00[EUR][1000 genomes]
rs60430705	1.00[EUR][1000 genomes]
rs6570756	1.00[EUR][1000 genomes]
rs6570758	1.00[EUR][1000 genomes]
rs6905255	1.00[EUR][1000 genomes]
rs6912218	1.00[EUR][1000 genomes]
rs6918099	1.00[EUR][1000 genomes]
rs6920054	0.81[AMR][1000 genomes]
rs6921574	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6927890	1.00[EUR][1000 genomes]
rs73573176	1.00[EUR][1000 genomes]
rs73573178	1.00[EUR][1000 genomes]
rs73573193	1.00[EUR][1000 genomes]
rs73575041	1.00[EUR][1000 genomes]
rs73577141	1.00[EUR][1000 genomes]
rs73577145	1.00[EUR][1000 genomes]
rs73577149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577150	1.00[EUR][1000 genomes]
rs73577157	1.00[EUR][1000 genomes]
rs73577164	1.00[EUR][1000 genomes]
rs73577174	1.00[EUR][1000 genomes]
rs73577179	1.00[EUR][1000 genomes]
rs73578805	1.00[EUR][1000 genomes]
rs73578807	1.00[EUR][1000 genomes]
rs73578811	1.00[EUR][1000 genomes]
rs73578812	1.00[EUR][1000 genomes]
rs73578814	1.00[EUR][1000 genomes]
rs73578823	1.00[EUR][1000 genomes]
rs73578827	1.00[EUR][1000 genomes]
rs73578832	1.00[EUR][1000 genomes]
rs73578833	1.00[EUR][1000 genomes]
rs7757974	1.00[EUR][1000 genomes]
rs7760995	1.00[EUR][1000 genomes]
rs7769505	1.00[EUR][1000 genomes]
rs9322056	1.00[EUR][1000 genomes]
rs9322062	1.00[EUR][1000 genomes]
rs9497540	1.00[EUR][1000 genomes]
rs9497541	1.00[EUR][1000 genomes]
rs9497542	1.00[EUR][1000 genomes]
rs9497543	1.00[EUR][1000 genomes]
rs9497557	1.00[EUR][1000 genomes]
rs996042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146607000-146609600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:146607600-146609600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:146608000-146610800	Weak transcription	NHDF-Ad	bronchial
4	chr6:146608600-146609200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:146608600-146609600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:146608800-146609400	Enhancers	Primary monocytes fromperipheralblood	blood

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