Variant report

Variant	rs73573176
Chromosome Location	chr6:146498370-146498371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs3025915	1.00[EUR][1000 genomes]
rs57889864	1.00[EUR][1000 genomes]
rs58702332	1.00[EUR][1000 genomes]
rs60430705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570756	1.00[EUR][1000 genomes]
rs6570758	1.00[EUR][1000 genomes]
rs6904612	1.00[EUR][1000 genomes]
rs6905255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923199	1.00[EUR][1000 genomes]
rs6927890	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576928	1.00[EUR][1000 genomes]
rs73577141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578805	1.00[EUR][1000 genomes]
rs73578807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582149	1.00[EUR][1000 genomes]
rs73582176	1.00[EUR][1000 genomes]
rs73582189	1.00[EUR][1000 genomes]
rs73584226	1.00[EUR][1000 genomes]
rs7739858	1.00[EUR][1000 genomes]
rs7757974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760995	1.00[EUR][1000 genomes]
rs9322056	1.00[EUR][1000 genomes]
rs9497449	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830836	chr6:146423405-146598983	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146496200-146499200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:146498000-146498600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:146498000-146498800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:146498000-146498800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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