Variant report

Variant	rs6912218
Chromosome Location	chr6:146622614-146622615
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs28411893	1.00[EUR][1000 genomes]
rs3025915	1.00[EUR][1000 genomes]
rs57889864	1.00[EUR][1000 genomes]
rs58843408	1.00[EUR][1000 genomes]
rs60430705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570756	1.00[EUR][1000 genomes]
rs6570758	1.00[EUR][1000 genomes]
rs6905255	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918099	1.00[EUR][1000 genomes]
rs6923199	1.00[EUR][1000 genomes]
rs6927890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577141	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577145	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578805	1.00[EUR][1000 genomes]
rs73578807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760995	1.00[EUR][1000 genomes]
rs7769505	1.00[EUR][1000 genomes]
rs9322056	1.00[EUR][1000 genomes]
rs9322062	1.00[EUR][1000 genomes]
rs9485093	1.00[EUR][1000 genomes]
rs9497540	1.00[EUR][1000 genomes]
rs9497541	1.00[EUR][1000 genomes]
rs9497542	1.00[EUR][1000 genomes]
rs9497543	1.00[EUR][1000 genomes]
rs9497557	1.00[EUR][1000 genomes]
rs996042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv527571	chr6:146620665-146633818	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146622000-146623000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:146622000-146624200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:146622400-146623200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:146622400-146625600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:146622600-146623800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:146622600-146624600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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